miRNA display CGI


Results 1 - 20 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31112 3' -63.4 NC_006560.1 + 2881 0.66 0.559673
Target:  5'- cGCGGcgagcaggaaggagaGGCCGCcgcGCgCGGCggUCCAGGc -3'
miRNA:   3'- aCGCC---------------CCGGUGua-CGgGCCG--AGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 39169 0.66 0.54629
Target:  5'- gGCGGGGCCGCcccccgucgGCCCccgcGCcCCGGu -3'
miRNA:   3'- aCGCCCCGGUGua-------CGGGc---CGaGGUCc -5'
31112 3' -63.4 NC_006560.1 + 114877 0.66 0.556797
Target:  5'- cGCGGGGgucgccgcucCCGCAUaaaagGCCCGGCggcgcgcgcgcggccCCAGa -3'
miRNA:   3'- aCGCCCC----------GGUGUA-----CGGGCCGa--------------GGUCc -5'
31112 3' -63.4 NC_006560.1 + 133195 0.66 0.552969
Target:  5'- cGCGGGGCCGCcguccagagcgaaccGCagCCGGCggUCCGGc -3'
miRNA:   3'- aCGCCCCGGUGua-------------CG--GGCCG--AGGUCc -5'
31112 3' -63.4 NC_006560.1 + 67076 0.66 0.55584
Target:  5'- gGCGGGGCUGC---CCgCGGCgCCAGa -3'
miRNA:   3'- aCGCCCCGGUGuacGG-GCCGaGGUCc -5'
31112 3' -63.4 NC_006560.1 + 35569 0.66 0.54629
Target:  5'- cGCGGaggagcgcucGGCCuuGUuuacGCCCGGCUcgcugCCGGGa -3'
miRNA:   3'- aCGCC----------CCGGugUA----CGGGCCGA-----GGUCC- -5'
31112 3' -63.4 NC_006560.1 + 111351 0.66 0.55584
Target:  5'- gGCGccuGGCCACGcGCgUGGC-CCGGGc -3'
miRNA:   3'- aCGCc--CCGGUGUaCGgGCCGaGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 142296 0.66 0.54629
Target:  5'- gGCGGGcGCgGCcgGCgCCGGCcgCUGGa -3'
miRNA:   3'- aCGCCC-CGgUGuaCG-GGCCGa-GGUCc -5'
31112 3' -63.4 NC_006560.1 + 66248 0.66 0.55584
Target:  5'- -cCGGGcGCCcgaagcACA-GCUCGGCgUCCAGGu -3'
miRNA:   3'- acGCCC-CGG------UGUaCGGGCCG-AGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 37505 0.66 0.598356
Target:  5'- uUGCGGGguggggguuuggcgcGCCGCG-GCUCGGCcgCgCGGGc -3'
miRNA:   3'- -ACGCCC---------------CGGUGUaCGGGCCGa-G-GUCC- -5'
31112 3' -63.4 NC_006560.1 + 57259 0.66 0.55584
Target:  5'- gGgGGGGCCuCGggGUCCGGCgcggCCucGGa -3'
miRNA:   3'- aCgCCCCGGuGUa-CGGGCCGa---GGu-CC- -5'
31112 3' -63.4 NC_006560.1 + 142179 0.66 0.54629
Target:  5'- cGCGcGGGCCcuaAUGggagGCgCGGCcUCCGGGc -3'
miRNA:   3'- aCGC-CCCGG---UGUa---CGgGCCG-AGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 27470 0.66 0.565438
Target:  5'- aGCGcGGGCaaccaGCAcGCCCGGCagcgUCCGc- -3'
miRNA:   3'- aCGC-CCCGg----UGUaCGGGCCG----AGGUcc -5'
31112 3' -63.4 NC_006560.1 + 112511 0.66 0.55584
Target:  5'- cGCGGGGCCugGaGCUCaGCgUgGGGc -3'
miRNA:   3'- aCGCCCCGGugUaCGGGcCGaGgUCC- -5'
31112 3' -63.4 NC_006560.1 + 87058 0.66 0.54629
Target:  5'- aGCcGGGCCACG-GCCgaGaGCUCgAGGu -3'
miRNA:   3'- aCGcCCCGGUGUaCGGg-C-CGAGgUCC- -5'
31112 3' -63.4 NC_006560.1 + 71129 0.66 0.55584
Target:  5'- gUGCGGGaggaagggaGCCuucuGCcccUGCCCGGCUCCc-- -3'
miRNA:   3'- -ACGCCC---------CGG----UGu--ACGGGCCGAGGucc -5'
31112 3' -63.4 NC_006560.1 + 123975 0.66 0.559673
Target:  5'- cGCcGGGCCGCGaaccccgcgaccccGCCCGGcCUCCGa- -3'
miRNA:   3'- aCGcCCCGGUGUa-------------CGGGCC-GAGGUcc -5'
31112 3' -63.4 NC_006560.1 + 211 0.66 0.54629
Target:  5'- cGCGccGCCGCGggaggGCCCGGC-CCGcGGc -3'
miRNA:   3'- aCGCccCGGUGUa----CGGGCCGaGGU-CC- -5'
31112 3' -63.4 NC_006560.1 + 105502 0.66 0.55584
Target:  5'- -cCGcGGCCGCGcuCCUGcGCUCCAGGg -3'
miRNA:   3'- acGCcCCGGUGUacGGGC-CGAGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 43137 0.66 0.562554
Target:  5'- cGCGGGGUCGgggucgcgagucguCAcggcgucgaggUGCCCGGCcaggCgGGGg -3'
miRNA:   3'- aCGCCCCGGU--------------GU-----------ACGGGCCGa---GgUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.