miRNA display CGI


Results 1 - 20 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31112 3' -63.4 NC_006560.1 + 19843 1.09 0.00064
Target:  5'- aUGCGGGGCCACAUGCCCGGCUCCAGGc -3'
miRNA:   3'- -ACGCCCCGGUGUACGGGCCGAGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 142530 0.84 0.037531
Target:  5'- gGCGGGGCCcCggGCCCGGCggCCGGGc -3'
miRNA:   3'- aCGCCCCGGuGuaCGGGCCGa-GGUCC- -5'
31112 3' -63.4 NC_006560.1 + 45366 0.8 0.079323
Target:  5'- aGCuGGGCCACcuucgaGCCgGGCUCCAGGa -3'
miRNA:   3'- aCGcCCCGGUGua----CGGgCCGAGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 71848 0.78 0.104786
Target:  5'- cGCGGGGCCugG-GCCCGGCggCCGc- -3'
miRNA:   3'- aCGCCCCGGugUaCGGGCCGa-GGUcc -5'
31112 3' -63.4 NC_006560.1 + 148274 0.78 0.112968
Target:  5'- cGCGGGGCCGCGaGCgCGGCcguagacccCCAGGa -3'
miRNA:   3'- aCGCCCCGGUGUaCGgGCCGa--------GGUCC- -5'
31112 3' -63.4 NC_006560.1 + 4895 0.77 0.121745
Target:  5'- gGCgGGGGCCGCGUcgcgcucgggGUCCGGgUCCGGGu -3'
miRNA:   3'- aCG-CCCCGGUGUA----------CGGGCCgAGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 1979 0.77 0.124809
Target:  5'- gGCGGGGCUcgggGCcgGgCCaGCUCCAGGg -3'
miRNA:   3'- aCGCCCCGG----UGuaCgGGcCGAGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 32154 0.77 0.124809
Target:  5'- gGCGGGGCCggGCGUcCCCGGCgCCgAGGg -3'
miRNA:   3'- aCGCCCCGG--UGUAcGGGCCGaGG-UCC- -5'
31112 3' -63.4 NC_006560.1 + 35257 0.76 0.141225
Target:  5'- cUGCGGGGCCGCGcgGCCgccgcgccgggCGGCggggcCCGGGg -3'
miRNA:   3'- -ACGCCCCGGUGUa-CGG-----------GCCGa----GGUCC- -5'
31112 3' -63.4 NC_006560.1 + 28333 0.76 0.144737
Target:  5'- cGgGGGGCgGCGccGCCCGGCUCCuccccgcggcGGGg -3'
miRNA:   3'- aCgCCCCGgUGUa-CGGGCCGAGG----------UCC- -5'
31112 3' -63.4 NC_006560.1 + 21007 0.76 0.148329
Target:  5'- gGCGGGGCgGCggGCCCgccccgaagGGCgggCCGGGg -3'
miRNA:   3'- aCGCCCCGgUGuaCGGG---------CCGa--GGUCC- -5'
31112 3' -63.4 NC_006560.1 + 18935 0.76 0.148329
Target:  5'- cGCGGcGuGCCGCGcgggGCCCGGCgggcgCCGGGc -3'
miRNA:   3'- aCGCC-C-CGGUGUa---CGGGCCGa----GGUCC- -5'
31112 3' -63.4 NC_006560.1 + 146859 0.76 0.152002
Target:  5'- gGCGGGGCgGC--GCCCGGC-CCAGc -3'
miRNA:   3'- aCGCCCCGgUGuaCGGGCCGaGGUCc -5'
31112 3' -63.4 NC_006560.1 + 46374 0.76 0.155757
Target:  5'- cGCGGGGCCgaguACGUGUCCG-CcCCGGGg -3'
miRNA:   3'- aCGCCCCGG----UGUACGGGCcGaGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 140190 0.75 0.159596
Target:  5'- aGCGGGuUgGCGaGCuCCGGCUCCAGGa -3'
miRNA:   3'- aCGCCCcGgUGUaCG-GGCCGAGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 33486 0.75 0.163124
Target:  5'- cGgGGGGCCGCcgGCagggaggcgggcgCCGGC-CCGGGg -3'
miRNA:   3'- aCgCCCCGGUGuaCG-------------GGCCGaGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 62453 0.75 0.167532
Target:  5'- aGCGGGGCCGCG-GCgCGggcGCUCaCAGGa -3'
miRNA:   3'- aCGCCCCGGUGUaCGgGC---CGAG-GUCC- -5'
31112 3' -63.4 NC_006560.1 + 81268 0.75 0.167532
Target:  5'- cGCGaGGGgCACAcuggcgGCCCGGCggCCGGGc -3'
miRNA:   3'- aCGC-CCCgGUGUa-----CGGGCCGa-GGUCC- -5'
31112 3' -63.4 NC_006560.1 + 90472 0.75 0.17163
Target:  5'- gGCGGGGCCGCAaaggCGGC-CCAGGg -3'
miRNA:   3'- aCGCCCCGGUGUacggGCCGaGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 118035 0.75 0.17163
Target:  5'- gGCGGGGCUcggcggggGCggGCCCGGCgccgCCGcGGg -3'
miRNA:   3'- aCGCCCCGG--------UGuaCGGGCCGa---GGU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.