miRNA display CGI


Results 1 - 20 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31112 3' -63.4 NC_006560.1 + 137 0.66 0.594465
Target:  5'- gGCGGGGCCg---GCCCcGCcCCGcGGu -3'
miRNA:   3'- aCGCCCCGGuguaCGGGcCGaGGU-CC- -5'
31112 3' -63.4 NC_006560.1 + 211 0.66 0.54629
Target:  5'- cGCGccGCCGCGggaggGCCCGGC-CCGcGGc -3'
miRNA:   3'- aCGCccCGGUGUa----CGGGCCGaGGU-CC- -5'
31112 3' -63.4 NC_006560.1 + 899 0.7 0.348842
Target:  5'- cGcCGGGGCCGCcgGCC--GCUCCcGGc -3'
miRNA:   3'- aC-GCCCCGGUGuaCGGgcCGAGGuCC- -5'
31112 3' -63.4 NC_006560.1 + 1123 0.67 0.536792
Target:  5'- cGCGacgcGCCccccuCcgGCCCGGCcUCCGGGg -3'
miRNA:   3'- aCGCcc--CGGu----GuaCGGGCCG-AGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 1883 0.7 0.348842
Target:  5'- gGCgGGGGUCGCGggcggcgGCgCCGGCUaCCAGu -3'
miRNA:   3'- aCG-CCCCGGUGUa------CG-GGCCGA-GGUCc -5'
31112 3' -63.4 NC_006560.1 + 1979 0.77 0.124809
Target:  5'- gGCGGGGCUcgggGCcgGgCCaGCUCCAGGg -3'
miRNA:   3'- aCGCCCCGG----UGuaCgGGcCGAGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 2080 0.71 0.313155
Target:  5'- gGCGGGGUC-CGgggGCCCGGCgUCGGc -3'
miRNA:   3'- aCGCCCCGGuGUa--CGGGCCGaGGUCc -5'
31112 3' -63.4 NC_006560.1 + 2117 0.68 0.47218
Target:  5'- aGCGGcGCgGCGUcgggGUCCGGCUCgggCAGGg -3'
miRNA:   3'- aCGCCcCGgUGUA----CGGGCCGAG---GUCC- -5'
31112 3' -63.4 NC_006560.1 + 2201 0.68 0.454438
Target:  5'- cGCGcGGCCGCGcgGUCCaGCgCCAGGu -3'
miRNA:   3'- aCGCcCCGGUGUa-CGGGcCGaGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 2716 0.68 0.463265
Target:  5'- gGCGGcGGCCGCcaGCa-GGC-CCAGGa -3'
miRNA:   3'- aCGCC-CCGGUGuaCGggCCGaGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 2881 0.66 0.559673
Target:  5'- cGCGGcgagcaggaaggagaGGCCGCcgcGCgCGGCggUCCAGGc -3'
miRNA:   3'- aCGCC---------------CCGGUGua-CGgGCCG--AGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 3069 0.7 0.341478
Target:  5'- gGCGcGGCCGgA-GCCCGGCUCgggCGGGc -3'
miRNA:   3'- aCGCcCCGGUgUaCGGGCCGAG---GUCC- -5'
31112 3' -63.4 NC_006560.1 + 3125 0.68 0.437063
Target:  5'- cGCGcGGGUCgaACAUgaGCgCGGCgcgCCAGGg -3'
miRNA:   3'- aCGC-CCCGG--UGUA--CGgGCCGa--GGUCC- -5'
31112 3' -63.4 NC_006560.1 + 3514 0.69 0.420077
Target:  5'- aGCaGGGGgCGCAgGCuCUGGUUCCGGa -3'
miRNA:   3'- aCG-CCCCgGUGUaCG-GGCCGAGGUCc -5'
31112 3' -63.4 NC_006560.1 + 3640 0.67 0.508667
Target:  5'- -aCGGcGGCgACGgcgGCCuCGGCgccgCCGGGg -3'
miRNA:   3'- acGCC-CCGgUGUa--CGG-GCCGa---GGUCC- -5'
31112 3' -63.4 NC_006560.1 + 4175 0.67 0.536792
Target:  5'- gGCGuGGGCCAggcccCAgccgaagcGCCCGGCggCCAuGGc -3'
miRNA:   3'- aCGC-CCCGGU-----GUa-------CGGGCCGa-GGU-CC- -5'
31112 3' -63.4 NC_006560.1 + 4551 0.66 0.575078
Target:  5'- gGCGGGGgC-UcgGcCCCGGg-CCAGGg -3'
miRNA:   3'- aCGCCCCgGuGuaC-GGGCCgaGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 4761 0.67 0.536792
Target:  5'- cGCGGcGGCgGCG-GCgCgGGgUCCGGGu -3'
miRNA:   3'- aCGCC-CCGgUGUaCG-GgCCgAGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 4810 0.74 0.188933
Target:  5'- aGuCGGGGUC-CGaGCCCGGgUCCGGGu -3'
miRNA:   3'- aC-GCCCCGGuGUaCGGGCCgAGGUCC- -5'
31112 3' -63.4 NC_006560.1 + 4895 0.77 0.121745
Target:  5'- gGCgGGGGCCGCGUcgcgcucgggGUCCGGgUCCGGGu -3'
miRNA:   3'- aCG-CCCCGGUGUA----------CGGGCCgAGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.