miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31112 5' -58.5 NC_006560.1 + 119501 0.66 0.814103
Target:  5'- cUgCCGGGAGGU-GCcuccgGGcCGCgGGGCCg -3'
miRNA:   3'- uAgGGUCCUCCAuCG-----UCaGCG-CCUGG- -5'
31112 5' -58.5 NC_006560.1 + 28173 0.66 0.814103
Target:  5'- gGUCCUGGGGuGaGUcGGUGGUCcCGGGCCg -3'
miRNA:   3'- -UAGGGUCCU-C-CA-UCGUCAGcGCCUGG- -5'
31112 5' -58.5 NC_006560.1 + 71640 0.66 0.814103
Target:  5'- -gCCUgguGGAGGgcggGGCguGGaCGCGGGCCu -3'
miRNA:   3'- uaGGGu--CCUCCa---UCG--UCaGCGCCUGG- -5'
31112 5' -58.5 NC_006560.1 + 102922 0.66 0.814103
Target:  5'- -gCCCucgcGGGGGaccggGGCGGcggCGCGGugCg -3'
miRNA:   3'- uaGGGu---CCUCCa----UCGUCa--GCGCCugG- -5'
31112 5' -58.5 NC_006560.1 + 18470 0.66 0.814103
Target:  5'- -cCCgCGGGAG--AGCgaggaGGUCGCGGACg -3'
miRNA:   3'- uaGG-GUCCUCcaUCG-----UCAGCGCCUGg -5'
31112 5' -58.5 NC_006560.1 + 102003 0.66 0.80543
Target:  5'- --gCCGGGGGG--GCGGUCcuccgcCGGACCg -3'
miRNA:   3'- uagGGUCCUCCauCGUCAGc-----GCCUGG- -5'
31112 5' -58.5 NC_006560.1 + 41283 0.66 0.80543
Target:  5'- --gCCAGGAacguccgGGCGGUCGCGcGGCUg -3'
miRNA:   3'- uagGGUCCUcca----UCGUCAGCGC-CUGG- -5'
31112 5' -58.5 NC_006560.1 + 54664 0.66 0.80543
Target:  5'- gGUCgCGGGGGcGcGGCAGcCGCcGGCCg -3'
miRNA:   3'- -UAGgGUCCUC-CaUCGUCaGCGcCUGG- -5'
31112 5' -58.5 NC_006560.1 + 56127 0.66 0.80543
Target:  5'- -gCCCGGucGGGGgcGCuGUCGUaGACCa -3'
miRNA:   3'- uaGGGUC--CUCCauCGuCAGCGcCUGG- -5'
31112 5' -58.5 NC_006560.1 + 147047 0.66 0.80543
Target:  5'- --gCCGGGGGGcGGCGGggggagGCGGGCg -3'
miRNA:   3'- uagGGUCCUCCaUCGUCag----CGCCUGg -5'
31112 5' -58.5 NC_006560.1 + 146502 0.66 0.80543
Target:  5'- gGUgCCGGGGGG-AGCugcgccggGCGGGCCg -3'
miRNA:   3'- -UAgGGUCCUCCaUCGucag----CGCCUGG- -5'
31112 5' -58.5 NC_006560.1 + 127622 0.66 0.80543
Target:  5'- -cCCCGGGuacacccgauGGUgacgaucgagcGGCAGgccaGCGGGCCg -3'
miRNA:   3'- uaGGGUCCu---------CCA-----------UCGUCag--CGCCUGG- -5'
31112 5' -58.5 NC_006560.1 + 93986 0.66 0.80543
Target:  5'- cGUUCgGGGAGGgggccggGGCGggggacGUCGCGG-CCu -3'
miRNA:   3'- -UAGGgUCCUCCa------UCGU------CAGCGCCuGG- -5'
31112 5' -58.5 NC_006560.1 + 57506 0.66 0.802798
Target:  5'- --aCCGGGGggccgcgaagagguGGUGGguGUCGUccgccaGGACCg -3'
miRNA:   3'- uagGGUCCU--------------CCAUCguCAGCG------CCUGG- -5'
31112 5' -58.5 NC_006560.1 + 106100 0.66 0.800153
Target:  5'- -cCCCAcGAGGacgcgGGCcacgaguaccaccuGUCGCGGGCCu -3'
miRNA:   3'- uaGGGUcCUCCa----UCGu-------------CAGCGCCUGG- -5'
31112 5' -58.5 NC_006560.1 + 134440 0.66 0.796605
Target:  5'- -gCCCAGGGcccggcugacGGcgcgGGCGGccccCGCGGGCCc -3'
miRNA:   3'- uaGGGUCCU----------CCa---UCGUCa---GCGCCUGG- -5'
31112 5' -58.5 NC_006560.1 + 81347 0.66 0.796605
Target:  5'- -cCCCAGGAcgaggccggcGGccaccAGCAG-CGCGGGCg -3'
miRNA:   3'- uaGGGUCCU----------CCa----UCGUCaGCGCCUGg -5'
31112 5' -58.5 NC_006560.1 + 148948 0.66 0.796605
Target:  5'- cAUCCCccgacGGGGcGGgacGCGGUgGCGcGACCa -3'
miRNA:   3'- -UAGGG-----UCCU-CCau-CGUCAgCGC-CUGG- -5'
31112 5' -58.5 NC_006560.1 + 146590 0.66 0.796605
Target:  5'- -cCCCGGcgcccGAGGccgGGCGcUUGCGGGCCu -3'
miRNA:   3'- uaGGGUC-----CUCCa--UCGUcAGCGCCUGG- -5'
31112 5' -58.5 NC_006560.1 + 105105 0.66 0.796605
Target:  5'- -gCCCGGGaAGGggAGCGGgacCGCuacuGGGCCc -3'
miRNA:   3'- uaGGGUCC-UCCa-UCGUCa--GCG----CCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.