miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31112 5' -58.5 NC_006560.1 + 19882 1.1 0.001404
Target:  5'- uAUCCCAGGAGGUAGCAGUCGCGGACCa -3'
miRNA:   3'- -UAGGGUCCUCCAUCGUCAGCGCCUGG- -5'
31112 5' -58.5 NC_006560.1 + 73973 0.82 0.122532
Target:  5'- -gUgCGGGAGGUGGCGG-CGCGGGCCc -3'
miRNA:   3'- uaGgGUCCUCCAUCGUCaGCGCCUGG- -5'
31112 5' -58.5 NC_006560.1 + 15120 0.8 0.14652
Target:  5'- -aCCCGGGGGGUcuucGUGGUCGCGGGCUc -3'
miRNA:   3'- uaGGGUCCUCCAu---CGUCAGCGCCUGG- -5'
31112 5' -58.5 NC_006560.1 + 68660 0.77 0.228784
Target:  5'- -gUCCAGGAGGgccuGCGGUuccuggCGCGGGCCa -3'
miRNA:   3'- uaGGGUCCUCCau--CGUCA------GCGCCUGG- -5'
31112 5' -58.5 NC_006560.1 + 130744 0.77 0.245806
Target:  5'- uUCCCgcccgugcggaAGGAGGgcGCGGUCGgGGACg -3'
miRNA:   3'- uAGGG-----------UCCUCCauCGUCAGCgCCUGg -5'
31112 5' -58.5 NC_006560.1 + 56708 0.76 0.282332
Target:  5'- -gCCCGGGuGGUGGCGcgaaaccGUCGCaGACCg -3'
miRNA:   3'- uaGGGUCCuCCAUCGU-------CAGCGcCUGG- -5'
31112 5' -58.5 NC_006560.1 + 118388 0.75 0.303189
Target:  5'- -cCCCGGGGGGcgGGCGGUU-CGGGCCc -3'
miRNA:   3'- uaGGGUCCUCCa-UCGUCAGcGCCUGG- -5'
31112 5' -58.5 NC_006560.1 + 62375 0.73 0.394873
Target:  5'- gGUCgCGGGGGGUGGCGGcUC-CGGugCu -3'
miRNA:   3'- -UAGgGUCCUCCAUCGUC-AGcGCCugG- -5'
31112 5' -58.5 NC_006560.1 + 11342 0.72 0.438017
Target:  5'- --aCCGGcGAGGgggGGCGGUagaUGCGGGCCg -3'
miRNA:   3'- uagGGUC-CUCCa--UCGUCA---GCGCCUGG- -5'
31112 5' -58.5 NC_006560.1 + 95071 0.72 0.446966
Target:  5'- -gCCCGGaGAGcugGGCGgacGUCGCGGGCCg -3'
miRNA:   3'- uaGGGUC-CUCca-UCGU---CAGCGCCUGG- -5'
31112 5' -58.5 NC_006560.1 + 35665 0.72 0.446966
Target:  5'- -cCCCGGGAGG-AGgGGcCGCGGGgCg -3'
miRNA:   3'- uaGGGUCCUCCaUCgUCaGCGCCUgG- -5'
31112 5' -58.5 NC_006560.1 + 88759 0.72 0.456015
Target:  5'- --gCCGGGGGG--GCGG-CGCGGACCc -3'
miRNA:   3'- uagGGUCCUCCauCGUCaGCGCCUGG- -5'
31112 5' -58.5 NC_006560.1 + 78109 0.72 0.465163
Target:  5'- -cCCCGGGcgcuGGUGGCGGUCaGCGugcucGGCCg -3'
miRNA:   3'- uaGGGUCCu---CCAUCGUCAG-CGC-----CUGG- -5'
31112 5' -58.5 NC_006560.1 + 47626 0.72 0.474405
Target:  5'- -gCCCAGGAGGUGGacguGGccguUCGCGGgaggACCg -3'
miRNA:   3'- uaGGGUCCUCCAUCg---UC----AGCGCC----UGG- -5'
31112 5' -58.5 NC_006560.1 + 130310 0.72 0.474405
Target:  5'- --gCCGGcGcGGUGGCGGcggCGCGGGCCg -3'
miRNA:   3'- uagGGUC-CuCCAUCGUCa--GCGCCUGG- -5'
31112 5' -58.5 NC_006560.1 + 18953 0.71 0.483738
Target:  5'- -gCCCGGcGGGcgccgGGC-GUCGCGGGCCg -3'
miRNA:   3'- uaGGGUCcUCCa----UCGuCAGCGCCUGG- -5'
31112 5' -58.5 NC_006560.1 + 17110 0.71 0.493159
Target:  5'- -gCUCAGGGGGcgggAGCGGgCGCgGGACCc -3'
miRNA:   3'- uaGGGUCCUCCa---UCGUCaGCG-CCUGG- -5'
31112 5' -58.5 NC_006560.1 + 140210 0.71 0.502662
Target:  5'- -cUCCAGGAGGgGGCGccacgcGUCGCcGACCa -3'
miRNA:   3'- uaGGGUCCUCCaUCGU------CAGCGcCUGG- -5'
31112 5' -58.5 NC_006560.1 + 132769 0.71 0.510322
Target:  5'- -aUCCAGGAGGUAGCGGgccauacaccaGUGGGgCa -3'
miRNA:   3'- uaGGGUCCUCCAUCGUCag---------CGCCUgG- -5'
31112 5' -58.5 NC_006560.1 + 121675 0.71 0.512245
Target:  5'- --gCCuGGGGGUGGCGGUCGCaaaguccaggaaGGGCa -3'
miRNA:   3'- uagGGuCCUCCAUCGUCAGCG------------CCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.