miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31112 5' -58.5 NC_006560.1 + 105105 0.66 0.796605
Target:  5'- -gCCCGGGaAGGggAGCGGgacCGCuacuGGGCCc -3'
miRNA:   3'- uaGGGUCC-UCCa-UCGUCa--GCG----CCUGG- -5'
31112 5' -58.5 NC_006560.1 + 11797 0.66 0.796605
Target:  5'- --gCCGGGGGGgGGCucGGUCGgGcGGCCc -3'
miRNA:   3'- uagGGUCCUCCaUCG--UCAGCgC-CUGG- -5'
31112 5' -58.5 NC_006560.1 + 99602 0.66 0.795714
Target:  5'- uUCCCcggcgcggcGGGGGGcggcUGGCGGUCcGCGGcgauggcGCCg -3'
miRNA:   3'- uAGGG---------UCCUCC----AUCGUCAG-CGCC-------UGG- -5'
31112 5' -58.5 NC_006560.1 + 142730 0.66 0.787634
Target:  5'- -gCCCGGGGGGcccGGCGGagcccggCGCccGGGCCc -3'
miRNA:   3'- uaGGGUCCUCCa--UCGUCa------GCG--CCUGG- -5'
31112 5' -58.5 NC_006560.1 + 33309 0.66 0.787634
Target:  5'- -gCCCGGGGGGcccGCcGgccCGCGGACg -3'
miRNA:   3'- uaGGGUCCUCCau-CGuCa--GCGCCUGg -5'
31112 5' -58.5 NC_006560.1 + 75124 0.66 0.778527
Target:  5'- -gCCCuGGGGGccGCGGcCGCcGACCu -3'
miRNA:   3'- uaGGGuCCUCCauCGUCaGCGcCUGG- -5'
31112 5' -58.5 NC_006560.1 + 106420 0.66 0.778527
Target:  5'- -cCUCGGGcGGcuggccgcggaGGCGGUCGCGGGCg -3'
miRNA:   3'- uaGGGUCCuCCa----------UCGUCAGCGCCUGg -5'
31112 5' -58.5 NC_006560.1 + 146059 0.66 0.778527
Target:  5'- -aCCCGGGggcggccucgGGGaGGCGGgagCGgCGGGCCc -3'
miRNA:   3'- uaGGGUCC----------UCCaUCGUCa--GC-GCCUGG- -5'
31112 5' -58.5 NC_006560.1 + 134503 0.67 0.768362
Target:  5'- -gCCCAgcaggaccuucacGGAGGcGGC-GUUGCGGACg -3'
miRNA:   3'- uaGGGU-------------CCUCCaUCGuCAGCGCCUGg -5'
31112 5' -58.5 NC_006560.1 + 28207 0.67 0.759938
Target:  5'- -gCCCGGGcGGGgAGC-GUCGgccCGGGCCg -3'
miRNA:   3'- uaGGGUCC-UCCaUCGuCAGC---GCCUGG- -5'
31112 5' -58.5 NC_006560.1 + 26240 0.67 0.759938
Target:  5'- -cCCCGgaggccgggccGGAGGggGGCGcGUCGCGGGgCu -3'
miRNA:   3'- uaGGGU-----------CCUCCa-UCGU-CAGCGCCUgG- -5'
31112 5' -58.5 NC_006560.1 + 79829 0.67 0.750474
Target:  5'- --gCCGGGcGGcgauuucGGCGG-CGCGGACCg -3'
miRNA:   3'- uagGGUCCuCCa------UCGUCaGCGCCUGG- -5'
31112 5' -58.5 NC_006560.1 + 1863 0.67 0.750474
Target:  5'- gGUCgCGGGcggGGGUcgcgGGCgggGGUCGCGGGCg -3'
miRNA:   3'- -UAGgGUCC---UCCA----UCG---UCAGCGCCUGg -5'
31112 5' -58.5 NC_006560.1 + 146258 0.67 0.750474
Target:  5'- -cCCCgagaugGGGAGGUAGCg--CGUgGGGCCg -3'
miRNA:   3'- uaGGG------UCCUCCAUCGucaGCG-CCUGG- -5'
31112 5' -58.5 NC_006560.1 + 65456 0.67 0.750474
Target:  5'- cGUCgCGGGAGaacggAGCGGgcgaggCGCGGACg -3'
miRNA:   3'- -UAGgGUCCUCca---UCGUCa-----GCGCCUGg -5'
31112 5' -58.5 NC_006560.1 + 57738 0.67 0.750474
Target:  5'- -cCCCGGGAGGggggacgcGGCGcgcgcGUCGgCGGGCa -3'
miRNA:   3'- uaGGGUCCUCCa-------UCGU-----CAGC-GCCUGg -5'
31112 5' -58.5 NC_006560.1 + 26348 0.67 0.750474
Target:  5'- -aCCCGGGAGGgcggagacGGCGGg-GCGGAg- -3'
miRNA:   3'- uaGGGUCCUCCa-------UCGUCagCGCCUgg -5'
31112 5' -58.5 NC_006560.1 + 85553 0.67 0.750474
Target:  5'- -gCCCGuGGGGGgcgggGGCGGcUCGgGGGCg -3'
miRNA:   3'- uaGGGU-CCUCCa----UCGUC-AGCgCCUGg -5'
31112 5' -58.5 NC_006560.1 + 135614 0.67 0.750474
Target:  5'- gGUUCCGGGAcGUGGCGG-CGCuGGagacGCCg -3'
miRNA:   3'- -UAGGGUCCUcCAUCGUCaGCG-CC----UGG- -5'
31112 5' -58.5 NC_006560.1 + 121320 0.67 0.749522
Target:  5'- -gCCCGgaaggacgugcGGAGG-AGCcgcgcgaAGUCGCGGACg -3'
miRNA:   3'- uaGGGU-----------CCUCCaUCG-------UCAGCGCCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.