miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31114 3' -58.1 NC_006560.1 + 48601 0.66 0.82483
Target:  5'- -----cCGCCAGG-CGGCGCUCaAGGg -3'
miRNA:   3'- cuucuaGUGGUCCgGCCGCGAGgUCU- -5'
31114 3' -58.1 NC_006560.1 + 142695 0.66 0.816302
Target:  5'- cGGAGGgggCGCCcGGCCGGcCGCggcCCcGAg -3'
miRNA:   3'- -CUUCUa--GUGGuCCGGCC-GCGa--GGuCU- -5'
31114 3' -58.1 NC_006560.1 + 25837 0.66 0.807609
Target:  5'- aGggGAcgGCguGGCCgGGCGCgcgcCCGGGg -3'
miRNA:   3'- -CuuCUagUGguCCGG-CCGCGa---GGUCU- -5'
31114 3' -58.1 NC_006560.1 + 73016 0.66 0.806731
Target:  5'- cGAGGUUACCAucgcccgcgagguGGCCGaGUGCUCgCGGc -3'
miRNA:   3'- cUUCUAGUGGU-------------CCGGC-CGCGAG-GUCu -5'
31114 3' -58.1 NC_006560.1 + 2937 0.66 0.80497
Target:  5'- gGGAGAcgccgccgagcuccUCGCCGGGCagCGGCGCg-UAGAg -3'
miRNA:   3'- -CUUCU--------------AGUGGUCCG--GCCGCGagGUCU- -5'
31114 3' -58.1 NC_006560.1 + 145904 0.66 0.802317
Target:  5'- -cGGGUCGCCcucggcggggguccaGGGgUGGCGCgagUCCAGGc -3'
miRNA:   3'- cuUCUAGUGG---------------UCCgGCCGCG---AGGUCU- -5'
31114 3' -58.1 NC_006560.1 + 1981 0.66 0.798758
Target:  5'- cGggGcUCgggGCCGGGCCa--GCUCCAGGg -3'
miRNA:   3'- -CuuCuAG---UGGUCCGGccgCGAGGUCU- -5'
31114 3' -58.1 NC_006560.1 + 23317 0.66 0.798758
Target:  5'- cGAGAaCGCCGccgcGGCCGGCGCcgcgCCGc- -3'
miRNA:   3'- cUUCUaGUGGU----CCGGCCGCGa---GGUcu -5'
31114 3' -58.1 NC_006560.1 + 32739 0.66 0.789759
Target:  5'- cGggGGg-GCgGGGcCCGGCGCgccggCCGGGg -3'
miRNA:   3'- -CuuCUagUGgUCC-GGCCGCGa----GGUCU- -5'
31114 3' -58.1 NC_006560.1 + 61645 0.66 0.789759
Target:  5'- cAGGAUCcgGCUgucGGCCGGCGCcugcgaCCGGAu -3'
miRNA:   3'- cUUCUAG--UGGu--CCGGCCGCGa-----GGUCU- -5'
31114 3' -58.1 NC_006560.1 + 13439 0.66 0.789759
Target:  5'- gGAGGA-CGCUGcGGCagGcGCGCUCCAGGa -3'
miRNA:   3'- -CUUCUaGUGGU-CCGg-C-CGCGAGGUCU- -5'
31114 3' -58.1 NC_006560.1 + 49071 0.66 0.780618
Target:  5'- gGAAGGgucCGCCGGcuccgagggcGCCgaGGUGCUCCGGGa -3'
miRNA:   3'- -CUUCUa--GUGGUC----------CGG--CCGCGAGGUCU- -5'
31114 3' -58.1 NC_006560.1 + 144197 0.66 0.780618
Target:  5'- --cGAcCcCCGGGCCGGCGC-CCGc- -3'
miRNA:   3'- cuuCUaGuGGUCCGGCCGCGaGGUcu -5'
31114 3' -58.1 NC_006560.1 + 36137 0.66 0.780618
Target:  5'- cGGGGUCgaGCCGGGCCcgccGGCGUUCUcccgcGGAc -3'
miRNA:   3'- cUUCUAG--UGGUCCGG----CCGCGAGG-----UCU- -5'
31114 3' -58.1 NC_006560.1 + 15280 0.66 0.780618
Target:  5'- --cGGUCGCgGGaGCCGGCGCggCGGc -3'
miRNA:   3'- cuuCUAGUGgUC-CGGCCGCGagGUCu -5'
31114 3' -58.1 NC_006560.1 + 106373 0.66 0.780618
Target:  5'- --cGcgCGCCgcuguGGGCCGcGCGCgCCAGGa -3'
miRNA:   3'- cuuCuaGUGG-----UCCGGC-CGCGaGGUCU- -5'
31114 3' -58.1 NC_006560.1 + 58408 0.66 0.780618
Target:  5'- --cGGggGCCGcGUCGGUGCUCCGGGg -3'
miRNA:   3'- cuuCUagUGGUcCGGCCGCGAGGUCU- -5'
31114 3' -58.1 NC_006560.1 + 68310 0.67 0.771347
Target:  5'- -uGGcgCACCGccuGGCCGucGCGCUgCCGGAc -3'
miRNA:   3'- cuUCuaGUGGU---CCGGC--CGCGA-GGUCU- -5'
31114 3' -58.1 NC_006560.1 + 100178 0.67 0.765724
Target:  5'- uGGAGAgcagCGCgCGGGugagcgucucggcgcCCGGCGC-CCAGAc -3'
miRNA:   3'- -CUUCUa---GUG-GUCC---------------GGCCGCGaGGUCU- -5'
31114 3' -58.1 NC_006560.1 + 68448 0.67 0.752444
Target:  5'- --cGGcCGCCcugGGGCCGGCGCggacccgCCAGu -3'
miRNA:   3'- cuuCUaGUGG---UCCGGCCGCGa------GGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.