miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31114 5' -61.8 NC_006560.1 + 20233 0.66 0.699699
Target:  5'- aGU-CGGaGUCggagCCCaGGCCAGaaguGACCUCGg -3'
miRNA:   3'- aCAuGCC-CAG----GGG-CCGGUC----CUGGAGC- -5'
31114 5' -61.8 NC_006560.1 + 105662 0.66 0.699699
Target:  5'- ---cCGGGaCCCCGGggccuacuccguCCGGGAgCUCGc -3'
miRNA:   3'- acauGCCCaGGGGCC------------GGUCCUgGAGC- -5'
31114 5' -61.8 NC_006560.1 + 149513 0.66 0.699699
Target:  5'- ---cCGGG-CCgCCGGcCCGGGACCa-- -3'
miRNA:   3'- acauGCCCaGG-GGCC-GGUCCUGGagc -5'
31114 5' -61.8 NC_006560.1 + 776 0.66 0.699699
Target:  5'- --cGCGGGUCCUU--UCuGGGCCUCGg -3'
miRNA:   3'- acaUGCCCAGGGGccGGuCCUGGAGC- -5'
31114 5' -61.8 NC_006560.1 + 35183 0.66 0.690072
Target:  5'- ---cCGGGgCCCCGccccgggggcGCCGGGGCC-CGg -3'
miRNA:   3'- acauGCCCaGGGGC----------CGGUCCUGGaGC- -5'
31114 5' -61.8 NC_006560.1 + 27137 0.66 0.680402
Target:  5'- aGUugGGG-CCCgCaccgagccgcgGGCCGGGcCCUCc -3'
miRNA:   3'- aCAugCCCaGGG-G-----------CCGGUCCuGGAGc -5'
31114 5' -61.8 NC_006560.1 + 57336 0.66 0.680402
Target:  5'- gUGcGCGGGgcaggCCgCGGCgaAGcGGCCUCGg -3'
miRNA:   3'- -ACaUGCCCa----GGgGCCGg-UC-CUGGAGC- -5'
31114 5' -61.8 NC_006560.1 + 121727 0.66 0.670694
Target:  5'- --gGCGGGcagCCCGGCgGGGGCgUCc -3'
miRNA:   3'- acaUGCCCag-GGGCCGgUCCUGgAGc -5'
31114 5' -61.8 NC_006560.1 + 57821 0.66 0.670694
Target:  5'- cGUGCGcGaagCCCCacGCCAGGGCCgCGg -3'
miRNA:   3'- aCAUGC-Cca-GGGGc-CGGUCCUGGaGC- -5'
31114 5' -61.8 NC_006560.1 + 118748 0.66 0.670694
Target:  5'- --gACGGcuGUCCCCGGCgucCAGGACgcgCUCc -3'
miRNA:   3'- acaUGCC--CAGGGGCCG---GUCCUG---GAGc -5'
31114 5' -61.8 NC_006560.1 + 132619 0.66 0.664856
Target:  5'- --cGCGGaaGUCCUCGGCCgcccagccgccggacAGGACCccgUCGg -3'
miRNA:   3'- acaUGCC--CAGGGGCCGG---------------UCCUGG---AGC- -5'
31114 5' -61.8 NC_006560.1 + 22223 0.66 0.660958
Target:  5'- --cGCGG--CCCCGGCCcGGGCCcCGc -3'
miRNA:   3'- acaUGCCcaGGGGCCGGuCCUGGaGC- -5'
31114 5' -61.8 NC_006560.1 + 82736 0.66 0.660958
Target:  5'- cGUGcCGGG-CCCCGGgacggcggaCgAGGACgUCGa -3'
miRNA:   3'- aCAU-GCCCaGGGGCC---------GgUCCUGgAGC- -5'
31114 5' -61.8 NC_006560.1 + 15452 0.66 0.660958
Target:  5'- cGUucGCGccgCCCgGGCCAGGGgCUCGu -3'
miRNA:   3'- aCA--UGCccaGGGgCCGGUCCUgGAGC- -5'
31114 5' -61.8 NC_006560.1 + 20076 0.66 0.651201
Target:  5'- --gACGGGggcggCUCCGuGCCGGGACUa-- -3'
miRNA:   3'- acaUGCCCa----GGGGC-CGGUCCUGGagc -5'
31114 5' -61.8 NC_006560.1 + 14891 0.66 0.651201
Target:  5'- cGUuccCGGG-CCCgGGUCGGGGCCcCu -3'
miRNA:   3'- aCAu--GCCCaGGGgCCGGUCCUGGaGc -5'
31114 5' -61.8 NC_006560.1 + 69323 0.66 0.651201
Target:  5'- gGUGCGuGG-CCCUGaCCGGGGCCa-- -3'
miRNA:   3'- aCAUGC-CCaGGGGCcGGUCCUGGagc -5'
31114 5' -61.8 NC_006560.1 + 983 0.66 0.647294
Target:  5'- ---cCGGGggcgcgccccucgCCCCGGCCGGGGCgC-CGu -3'
miRNA:   3'- acauGCCCa------------GGGGCCGGUCCUG-GaGC- -5'
31114 5' -61.8 NC_006560.1 + 21056 0.66 0.641431
Target:  5'- --cGCGGcGUCCCCGGUcgccuagcaacgCAGGAUCgUUGg -3'
miRNA:   3'- acaUGCC-CAGGGGCCG------------GUCCUGG-AGC- -5'
31114 5' -61.8 NC_006560.1 + 142530 0.66 0.641431
Target:  5'- --gGCGGGgCCCCgggcccggcGGCCGGGcGCgUCGg -3'
miRNA:   3'- acaUGCCCaGGGG---------CCGGUCC-UGgAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.