miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31114 5' -61.8 NC_006560.1 + 423 0.71 0.385694
Target:  5'- cUGUG-GGGuUCCCCGGCCuccGcGGCCUCc -3'
miRNA:   3'- -ACAUgCCC-AGGGGCCGGu--C-CUGGAGc -5'
31114 5' -61.8 NC_006560.1 + 776 0.66 0.699699
Target:  5'- --cGCGGGUCCUU--UCuGGGCCUCGg -3'
miRNA:   3'- acaUGCCCAGGGGccGGuCCUGGAGC- -5'
31114 5' -61.8 NC_006560.1 + 983 0.66 0.647294
Target:  5'- ---cCGGGggcgcgccccucgCCCCGGCCGGGGCgC-CGu -3'
miRNA:   3'- acauGCCCa------------GGGGCCGGUCCUG-GaGC- -5'
31114 5' -61.8 NC_006560.1 + 4547 0.71 0.377792
Target:  5'- cGgggGCGGGggcucggCCCCgGGCCAGGG-CUCGc -3'
miRNA:   3'- aCa--UGCCCa------GGGG-CCGGUCCUgGAGC- -5'
31114 5' -61.8 NC_006560.1 + 5150 0.77 0.170678
Target:  5'- --cGCGGGgCCCgGGCCGGGGCCgCGg -3'
miRNA:   3'- acaUGCCCaGGGgCCGGUCCUGGaGC- -5'
31114 5' -61.8 NC_006560.1 + 6134 0.67 0.631653
Target:  5'- cUGcGCGGcGUCCCCGGUugccuagcaacgCAGGAUCgUUGg -3'
miRNA:   3'- -ACaUGCC-CAGGGGCCG------------GUCCUGG-AGC- -5'
31114 5' -61.8 NC_006560.1 + 10250 0.7 0.461492
Target:  5'- --cGCGGGUCgCggCGGCCccGGCCUCGg -3'
miRNA:   3'- acaUGCCCAGgG--GCCGGucCUGGAGC- -5'
31114 5' -61.8 NC_006560.1 + 12210 0.68 0.573226
Target:  5'- --gACGGGcCCCgCGGCCAGGAg---- -3'
miRNA:   3'- acaUGCCCaGGG-GCCGGUCCUggagc -5'
31114 5' -61.8 NC_006560.1 + 13359 0.68 0.544444
Target:  5'- gGUGa-GGUUguagcgcgcgCCCGGCCGGGccGCCUCGg -3'
miRNA:   3'- aCAUgcCCAG----------GGGCCGGUCC--UGGAGC- -5'
31114 5' -61.8 NC_006560.1 + 14891 0.66 0.651201
Target:  5'- cGUuccCGGG-CCCgGGUCGGGGCCcCu -3'
miRNA:   3'- aCAu--GCCCaGGGgCCGGUCCUGGaGc -5'
31114 5' -61.8 NC_006560.1 + 15452 0.66 0.660958
Target:  5'- cGUucGCGccgCCCgGGCCAGGGgCUCGu -3'
miRNA:   3'- aCA--UGCccaGGGgCCGGUCCUgGAGC- -5'
31114 5' -61.8 NC_006560.1 + 15660 0.69 0.506845
Target:  5'- --aGCGGGUucgcggccgagaCCCaggCGGCCGGGACCgagCGc -3'
miRNA:   3'- acaUGCCCA------------GGG---GCCGGUCCUGGa--GC- -5'
31114 5' -61.8 NC_006560.1 + 16866 1.09 0.000995
Target:  5'- gUGUACGGGUCCCCGGCCAGGACCUCGg -3'
miRNA:   3'- -ACAUGCCCAGGGGCCGGUCCUGGAGC- -5'
31114 5' -61.8 NC_006560.1 + 18781 0.67 0.592613
Target:  5'- gGUACGGcGUCCUgCGGCCgcGGGACgC-CGu -3'
miRNA:   3'- aCAUGCC-CAGGG-GCCGG--UCCUG-GaGC- -5'
31114 5' -61.8 NC_006560.1 + 20076 0.66 0.651201
Target:  5'- --gACGGGggcggCUCCGuGCCGGGACUa-- -3'
miRNA:   3'- acaUGCCCa----GGGGC-CGGUCCUGGagc -5'
31114 5' -61.8 NC_006560.1 + 20233 0.66 0.699699
Target:  5'- aGU-CGGaGUCggagCCCaGGCCAGaaguGACCUCGg -3'
miRNA:   3'- aCAuGCC-CAG----GGG-CCGGUC----CUGGAGC- -5'
31114 5' -61.8 NC_006560.1 + 21056 0.66 0.641431
Target:  5'- --cGCGGcGUCCCCGGUcgccuagcaacgCAGGAUCgUUGg -3'
miRNA:   3'- acaUGCC-CAGGGGCCG------------GUCCUGG-AGC- -5'
31114 5' -61.8 NC_006560.1 + 22223 0.66 0.660958
Target:  5'- --cGCGG--CCCCGGCCcGGGCCcCGc -3'
miRNA:   3'- acaUGCCcaGGGGCCGGuCCUGGaGC- -5'
31114 5' -61.8 NC_006560.1 + 22373 0.68 0.544444
Target:  5'- cGgcgACGGGcaccccgcCCCCGGCUcGGACCcCGg -3'
miRNA:   3'- aCa--UGCCCa-------GGGGCCGGuCCUGGaGC- -5'
31114 5' -61.8 NC_006560.1 + 26074 0.68 0.553034
Target:  5'- cGUGCGGGcggaaCCCgggcggcccggcgCGGCgGGGGCUUCGc -3'
miRNA:   3'- aCAUGCCCa----GGG-------------GCCGgUCCUGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.