miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31114 5' -61.8 NC_006560.1 + 149513 0.66 0.699699
Target:  5'- ---cCGGG-CCgCCGGcCCGGGACCa-- -3'
miRNA:   3'- acauGCCCaGG-GGCC-GGUCCUGGagc -5'
31114 5' -61.8 NC_006560.1 + 145379 0.71 0.413363
Target:  5'- cUGgcCGGGccucuguccccugugUCUCUGGCCGGG-CCUCGg -3'
miRNA:   3'- -ACauGCCC---------------AGGGGCCGGUCCuGGAGC- -5'
31114 5' -61.8 NC_006560.1 + 26366 0.7 0.416698
Target:  5'- --gGCGGGgcggagacggcgCCCCGGCCGGGGCg--- -3'
miRNA:   3'- acaUGCCCa-----------GGGGCCGGUCCUGgagc -5'
31114 5' -61.8 NC_006560.1 + 39893 0.7 0.43533
Target:  5'- --gGCGGGUCUCCgucguucgGGCCGGGguGCgCUCGg -3'
miRNA:   3'- acaUGCCCAGGGG--------CCGGUCC--UG-GAGC- -5'
31114 5' -61.8 NC_006560.1 + 45552 0.7 0.444824
Target:  5'- --gACGGcuggaucaccaccguUCCuCCGGCCGGGACCUCc -3'
miRNA:   3'- acaUGCCc--------------AGG-GGCCGGUCCUGGAGc -5'
31114 5' -61.8 NC_006560.1 + 72078 0.7 0.452678
Target:  5'- cGUGCccuGGGgCCCCGaGCCGGcGACCcCGg -3'
miRNA:   3'- aCAUG---CCCaGGGGC-CGGUC-CUGGaGC- -5'
31114 5' -61.8 NC_006560.1 + 10250 0.7 0.461492
Target:  5'- --cGCGGGUCgCggCGGCCccGGCCUCGg -3'
miRNA:   3'- acaUGCCCAGgG--GCCGGucCUGGAGC- -5'
31114 5' -61.8 NC_006560.1 + 90001 0.69 0.470396
Target:  5'- cUGUGCGcGcgCCUCGGCCuGGACCcCGa -3'
miRNA:   3'- -ACAUGCcCa-GGGGCCGGuCCUGGaGC- -5'
31114 5' -61.8 NC_006560.1 + 85450 0.69 0.470396
Target:  5'- cGUGCcccGGGUCCUCGGCCAGcuCCg-- -3'
miRNA:   3'- aCAUG---CCCAGGGGCCGGUCcuGGagc -5'
31114 5' -61.8 NC_006560.1 + 32745 0.71 0.393705
Target:  5'- --gGCGGGgcccggcgCgCCGGCCGGGGUCUCGg -3'
miRNA:   3'- acaUGCCCa-------GgGGCCGGUCCUGGAGC- -5'
31114 5' -61.8 NC_006560.1 + 423 0.71 0.385694
Target:  5'- cUGUG-GGGuUCCCCGGCCuccGcGGCCUCc -3'
miRNA:   3'- -ACAUgCCC-AGGGGCCGGu--C-CUGGAGc -5'
31114 5' -61.8 NC_006560.1 + 4547 0.71 0.377792
Target:  5'- cGgggGCGGGggcucggCCCCgGGCCAGGG-CUCGc -3'
miRNA:   3'- aCa--UGCCCa------GGGG-CCGGUCCUgGAGC- -5'
31114 5' -61.8 NC_006560.1 + 5150 0.77 0.170678
Target:  5'- --cGCGGGgCCCgGGCCGGGGCCgCGg -3'
miRNA:   3'- acaUGCCCaGGGgCCGGUCCUGGaGC- -5'
31114 5' -61.8 NC_006560.1 + 54712 0.74 0.243332
Target:  5'- gGU-CGGGUCCCaGGCCAGGcACCcCGc -3'
miRNA:   3'- aCAuGCCCAGGGgCCGGUCC-UGGaGC- -5'
31114 5' -61.8 NC_006560.1 + 145264 0.73 0.277071
Target:  5'- cGUGgGGGagCCCCGGCCccccggcccccuggGcGGGCCUCGg -3'
miRNA:   3'- aCAUgCCCa-GGGGCCGG--------------U-CCUGGAGC- -5'
31114 5' -61.8 NC_006560.1 + 43876 0.73 0.298258
Target:  5'- --aGCGGGgCCCCGcgacCCAGGGCCUCc -3'
miRNA:   3'- acaUGCCCaGGGGCc---GGUCCUGGAGc -5'
31114 5' -61.8 NC_006560.1 + 56429 0.73 0.311016
Target:  5'- gGUGCGGuugCCCCGcGCCGGGGucgaggaggcggcCCUCGg -3'
miRNA:   3'- aCAUGCCca-GGGGC-CGGUCCU-------------GGAGC- -5'
31114 5' -61.8 NC_006560.1 + 64158 0.72 0.325594
Target:  5'- --gGCGGGUCCCCaGGCCcagcauggcGGGCgUCGa -3'
miRNA:   3'- acaUGCCCAGGGG-CCGGu--------CCUGgAGC- -5'
31114 5' -61.8 NC_006560.1 + 51012 0.72 0.354748
Target:  5'- --gGgGGGUCCCUGGCCuacuGGGCCg-- -3'
miRNA:   3'- acaUgCCCAGGGGCCGGu---CCUGGagc -5'
31114 5' -61.8 NC_006560.1 + 106569 0.71 0.377792
Target:  5'- ---cCGGGUUCCUcgggGGCCGGGGCCUgGc -3'
miRNA:   3'- acauGCCCAGGGG----CCGGUCCUGGAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.