Results 21 - 40 of 213 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31115 | 3' | -52.6 | NC_006560.1 | + | 118642 | 0.66 | 0.96439 |
Target: 5'- aACUcgGugGCGuGgGGCGGCCGCAacGCc -3' miRNA: 3'- aUGAaaCuuUGU-CgCCGUCGGCGU--CG- -5' |
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31115 | 3' | -52.6 | NC_006560.1 | + | 84407 | 0.66 | 0.96439 |
Target: 5'- gACggcaGggGC-GCGGCcagGGCCGCGGg -3' miRNA: 3'- aUGaaa-CuuUGuCGCCG---UCGGCGUCg -5' |
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31115 | 3' | -52.6 | NC_006560.1 | + | 147137 | 0.66 | 0.96439 |
Target: 5'- -----cGAGGC-GCGcGC-GCCGCGGCg -3' miRNA: 3'- augaaaCUUUGuCGC-CGuCGGCGUCG- -5' |
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31115 | 3' | -52.6 | NC_006560.1 | + | 99877 | 0.66 | 0.96439 |
Target: 5'- gGCgcgGGggUcguGGCGGCGGCgGgCGGCg -3' miRNA: 3'- aUGaaaCUuuG---UCGCCGUCGgC-GUCG- -5' |
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31115 | 3' | -52.6 | NC_006560.1 | + | 55016 | 0.66 | 0.96439 |
Target: 5'- -----cGggGCGcGCGGaaaGGCgCGCGGCg -3' miRNA: 3'- augaaaCuuUGU-CGCCg--UCG-GCGUCG- -5' |
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31115 | 3' | -52.6 | NC_006560.1 | + | 34395 | 0.66 | 0.96439 |
Target: 5'- cGCgggggggGGggUggGGCGGCGGCCGguGg -3' miRNA: 3'- aUGaaa----CUuuG--UCGCCGUCGGCguCg -5' |
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31115 | 3' | -52.6 | NC_006560.1 | + | 95854 | 0.66 | 0.960823 |
Target: 5'- gUGCgagccGGACGGCGGCaucGGCCcGCGGUc -3' miRNA: 3'- -AUGaaac-UUUGUCGCCG---UCGG-CGUCG- -5' |
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31115 | 3' | -52.6 | NC_006560.1 | + | 133380 | 0.66 | 0.960823 |
Target: 5'- -cCUgccuAAgGGCGGCGGCCGCcGUc -3' miRNA: 3'- auGAaacuUUgUCGCCGUCGGCGuCG- -5' |
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31115 | 3' | -52.6 | NC_006560.1 | + | 85916 | 0.66 | 0.960823 |
Target: 5'- cGCgc-GGccAGC-GCGGCGGCCGCcGCc -3' miRNA: 3'- aUGaaaCU--UUGuCGCCGUCGGCGuCG- -5' |
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31115 | 3' | -52.6 | NC_006560.1 | + | 147912 | 0.66 | 0.960823 |
Target: 5'- -----cGggGCGGgGGCGGgggagagggggcCCGCGGCc -3' miRNA: 3'- augaaaCuuUGUCgCCGUC------------GGCGUCG- -5' |
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31115 | 3' | -52.6 | NC_006560.1 | + | 83498 | 0.66 | 0.960823 |
Target: 5'- gAgUUUGAGGCgcgcgaGGgGGCgGGCCGCGGg -3' miRNA: 3'- aUgAAACUUUG------UCgCCG-UCGGCGUCg -5' |
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31115 | 3' | -52.6 | NC_006560.1 | + | 8540 | 0.66 | 0.960823 |
Target: 5'- cGCguggUGggGguGgGGCgacuguGGCUGCGGCg -3' miRNA: 3'- aUGaa--ACuuUguCgCCG------UCGGCGUCG- -5' |
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31115 | 3' | -52.6 | NC_006560.1 | + | 108504 | 0.66 | 0.960823 |
Target: 5'- cGCcg-GggGgAG-GGCGGCCgGCGGCg -3' miRNA: 3'- aUGaaaCuuUgUCgCCGUCGG-CGUCG- -5' |
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31115 | 3' | -52.6 | NC_006560.1 | + | 102836 | 0.66 | 0.957017 |
Target: 5'- cGCgaggGggGCGGCGGUuggggaauggcgAGCCgggcgcGCGGCg -3' miRNA: 3'- aUGaaa-CuuUGUCGCCG------------UCGG------CGUCG- -5' |
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31115 | 3' | -52.6 | NC_006560.1 | + | 68420 | 0.66 | 0.957017 |
Target: 5'- cUGCUg-GAGGCGGCGggacugcgcaccGCGGCCGCccuggggccGGCg -3' miRNA: 3'- -AUGAaaCUUUGUCGC------------CGUCGGCG---------UCG- -5' |
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31115 | 3' | -52.6 | NC_006560.1 | + | 150042 | 0.66 | 0.957017 |
Target: 5'- gGCgagGAcGACcuccGCGGCGGCCGCGccccGCg -3' miRNA: 3'- aUGaaaCU-UUGu---CGCCGUCGGCGU----CG- -5' |
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31115 | 3' | -52.6 | NC_006560.1 | + | 4153 | 0.66 | 0.957017 |
Target: 5'- gGCUcaugGccACGGCGGCGGCgGCgugGGCc -3' miRNA: 3'- aUGAaa--CuuUGUCGCCGUCGgCG---UCG- -5' |
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31115 | 3' | -52.6 | NC_006560.1 | + | 137611 | 0.66 | 0.957017 |
Target: 5'- cGCggagGAGguGCGcCGGCGGCaCGCGGCc -3' miRNA: 3'- aUGaaa-CUU--UGUcGCCGUCG-GCGUCG- -5' |
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31115 | 3' | -52.6 | NC_006560.1 | + | 96658 | 0.66 | 0.956623 |
Target: 5'- gGCgcUGAAGcCGGCcaaGGCcgcgacccgcaccAGCCGCGGCu -3' miRNA: 3'- aUGaaACUUU-GUCG---CCG-------------UCGGCGUCG- -5' |
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31115 | 3' | -52.6 | NC_006560.1 | + | 65053 | 0.67 | 0.952966 |
Target: 5'- gGCgcgGggGCAGgGGCcGCgGguGCc -3' miRNA: 3'- aUGaaaCuuUGUCgCCGuCGgCguCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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