miRNA display CGI


Results 21 - 40 of 230 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31115 5' -63.9 NC_006560.1 + 27842 0.66 0.545632
Target:  5'- gGUGCcgGGGGUGCCGgGggucuccCGCCcgCGGc -3'
miRNA:   3'- -CGCGa-CCCCGCGGCgC-------GCGGuaGCUu -5'
31115 5' -63.9 NC_006560.1 + 30553 0.66 0.543722
Target:  5'- gGCGCcccgaGGcGGCGCCGCggcgcgcgcgccucGCGCCG-CGGc -3'
miRNA:   3'- -CGCGa----CC-CCGCGGCG--------------CGCGGUaGCUu -5'
31115 5' -63.9 NC_006560.1 + 120189 0.66 0.543722
Target:  5'- gGCGCUGGGcgagcuGUGCCcccccggcagccgcGCGCGCCAccUGGGg -3'
miRNA:   3'- -CGCGACCC------CGCGG--------------CGCGCGGUa-GCUU- -5'
31115 5' -63.9 NC_006560.1 + 26508 0.66 0.542768
Target:  5'- cGCGCgagGGGGCgggggccgugggcgGgCGCGCGCggggccucgugggCGUCGGAu -3'
miRNA:   3'- -CGCGa--CCCCG--------------CgGCGCGCG-------------GUAGCUU- -5'
31115 5' -63.9 NC_006560.1 + 149150 0.66 0.542768
Target:  5'- gGCGCggggcggcccccaGGGGCGgCGCGCGgggagcCCAUCa-- -3'
miRNA:   3'- -CGCGa------------CCCCGCgGCGCGC------GGUAGcuu -5'
31115 5' -63.9 NC_006560.1 + 131133 0.66 0.537056
Target:  5'- cGCgGCcGGGGCG-CGCGCGCUcgCc-- -3'
miRNA:   3'- -CG-CGaCCCCGCgGCGCGCGGuaGcuu -5'
31115 5' -63.9 NC_006560.1 + 77117 0.66 0.537056
Target:  5'- gGCGCggGcGGGcCGCCGC-CGCCcgCGc- -3'
miRNA:   3'- -CGCGa-C-CCC-GCGGCGcGCGGuaGCuu -5'
31115 5' -63.9 NC_006560.1 + 103135 0.66 0.537056
Target:  5'- cGCGCccccGGGCGCCcucuGCGCGUCuUCGu- -3'
miRNA:   3'- -CGCGac--CCCGCGG----CGCGCGGuAGCuu -5'
31115 5' -63.9 NC_006560.1 + 105246 0.66 0.537056
Target:  5'- cCGCUGGGGCuCCuCGCuccGCCggCGGAg -3'
miRNA:   3'- cGCGACCCCGcGGcGCG---CGGuaGCUU- -5'
31115 5' -63.9 NC_006560.1 + 40093 0.66 0.537056
Target:  5'- gGgGC-GGGGCGCC-CGgGCCGcCGGg -3'
miRNA:   3'- -CgCGaCCCCGCGGcGCgCGGUaGCUu -5'
31115 5' -63.9 NC_006560.1 + 543 0.66 0.537056
Target:  5'- cGCGCcccgGGuccccGGCGucccCCGCGCGCCccGUCGGu -3'
miRNA:   3'- -CGCGa---CC-----CCGC----GGCGCGCGG--UAGCUu -5'
31115 5' -63.9 NC_006560.1 + 126415 0.66 0.537056
Target:  5'- cGCGCaUGGaGcCGCgCGCGCGCCGgaucgcCGAGc -3'
miRNA:   3'- -CGCG-ACCcC-GCG-GCGCGCGGUa-----GCUU- -5'
31115 5' -63.9 NC_006560.1 + 85524 0.66 0.537056
Target:  5'- cCGCgGGGGCGCUuggggggggcggGgGCGCCcgUGGGg -3'
miRNA:   3'- cGCGaCCCCGCGG------------CgCGCGGuaGCUU- -5'
31115 5' -63.9 NC_006560.1 + 34949 0.66 0.537056
Target:  5'- cGCGCccccGGGGC-CCGgGCGCCGg---- -3'
miRNA:   3'- -CGCGa---CCCCGcGGCgCGCGGUagcuu -5'
31115 5' -63.9 NC_006560.1 + 23379 0.66 0.537056
Target:  5'- uCGCcGGcuacGGCGCCGCggGCGUCGUCGc- -3'
miRNA:   3'- cGCGaCC----CCGCGGCG--CGCGGUAGCuu -5'
31115 5' -63.9 NC_006560.1 + 78114 0.66 0.534208
Target:  5'- gGCGCUGGuGGCggucagcgugcucgGCCGCauGUGCCugcCGAGc -3'
miRNA:   3'- -CGCGACC-CCG--------------CGGCG--CGCGGua-GCUU- -5'
31115 5' -63.9 NC_006560.1 + 138096 0.66 0.53326
Target:  5'- cGCGUacagccuccacGGCGCCGCGaCGUCGUCGGc -3'
miRNA:   3'- -CGCGacc--------CCGCGGCGC-GCGGUAGCUu -5'
31115 5' -63.9 NC_006560.1 + 92715 0.66 0.527583
Target:  5'- cGCuCUGcGaGCaGCUGCGCGCCAUCGu- -3'
miRNA:   3'- -CGcGACcC-CG-CGGCGCGCGGUAGCuu -5'
31115 5' -63.9 NC_006560.1 + 54666 0.66 0.527583
Target:  5'- uCGCgGGGGCGCgGCagccgccggccGCGCCcUCGu- -3'
miRNA:   3'- cGCGaCCCCGCGgCG-----------CGCGGuAGCuu -5'
31115 5' -63.9 NC_006560.1 + 95577 0.66 0.527583
Target:  5'- gGgGCcgGGGGCGCCggcaccgaGUGgGCCGUCa-- -3'
miRNA:   3'- -CgCGa-CCCCGCGG--------CGCgCGGUAGcuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.