miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31116 3' -57.4 NC_006560.1 + 37582 0.66 0.868511
Target:  5'- cUGCauGGCCGcCGCGGUGcCcGUCCAa -3'
miRNA:   3'- -ACGgcCUGGU-GCGCUACaGaCAGGUg -5'
31116 3' -57.4 NC_006560.1 + 81398 0.66 0.868511
Target:  5'- cUGCCGGGCCA-GCGAgGgcgCgcgCCACc -3'
miRNA:   3'- -ACGGCCUGGUgCGCUaCa--GacaGGUG- -5'
31116 3' -57.4 NC_006560.1 + 111353 0.66 0.861042
Target:  5'- cGCCuGGCCACGCGcGUGgccCgggCCACg -3'
miRNA:   3'- aCGGcCUGGUGCGC-UACa--GacaGGUG- -5'
31116 3' -57.4 NC_006560.1 + 36911 0.66 0.861042
Target:  5'- cGCCGGGCCgaGCGCcgGAgcGUCUGgCgGCg -3'
miRNA:   3'- aCGGCCUGG--UGCG--CUa-CAGACaGgUG- -5'
31116 3' -57.4 NC_006560.1 + 25174 0.66 0.860284
Target:  5'- cGCUGGACCGCGCGG-------CCGCg -3'
miRNA:   3'- aCGGCCUGGUGCGCUacagacaGGUG- -5'
31116 3' -57.4 NC_006560.1 + 118511 0.66 0.8455
Target:  5'- gGCUGGACCGCG-GGUGggaggcgCUGgCCGg -3'
miRNA:   3'- aCGGCCUGGUGCgCUACa------GACaGGUg -5'
31116 3' -57.4 NC_006560.1 + 127990 0.66 0.8455
Target:  5'- gUGCUGGugCugGaCGAgGUCaUGUCgACc -3'
miRNA:   3'- -ACGGCCugGugC-GCUaCAG-ACAGgUG- -5'
31116 3' -57.4 NC_006560.1 + 146603 0.66 0.8455
Target:  5'- gGCCGGGCgCuuGCGGgccuggGUCUggGUCUGCg -3'
miRNA:   3'- aCGGCCUG-GugCGCUa-----CAGA--CAGGUG- -5'
31116 3' -57.4 NC_006560.1 + 66331 0.66 0.83744
Target:  5'- uUGCCGGugUGCGCGGccUCgUGggggCCGCc -3'
miRNA:   3'- -ACGGCCugGUGCGCUacAG-ACa---GGUG- -5'
31116 3' -57.4 NC_006560.1 + 58402 0.66 0.83744
Target:  5'- cGCCcccggGGGCCGCGuCGGUGcUCcggggGUCCAg -3'
miRNA:   3'- aCGG-----CCUGGUGC-GCUAC-AGa----CAGGUg -5'
31116 3' -57.4 NC_006560.1 + 124713 0.66 0.83744
Target:  5'- aGCCGGccgcCCGCGCGcUG-CUGuUCCGa -3'
miRNA:   3'- aCGGCCu---GGUGCGCuACaGAC-AGGUg -5'
31116 3' -57.4 NC_006560.1 + 77205 0.66 0.829195
Target:  5'- cGCCGGACCuGCG-GAUGgugcgCUG-CCGg -3'
miRNA:   3'- aCGGCCUGG-UGCgCUACa----GACaGGUg -5'
31116 3' -57.4 NC_006560.1 + 134208 0.66 0.829195
Target:  5'- gGCgCGGGCC-CGCGggGUCggccCCGCc -3'
miRNA:   3'- aCG-GCCUGGuGCGCuaCAGaca-GGUG- -5'
31116 3' -57.4 NC_006560.1 + 122928 0.66 0.829195
Target:  5'- cGCCgGGGCCGCGC--UGaacGUCCGCg -3'
miRNA:   3'- aCGG-CCUGGUGCGcuACagaCAGGUG- -5'
31116 3' -57.4 NC_006560.1 + 71596 0.67 0.820774
Target:  5'- cG-CGGGCCucCGCGAUGccCUGUCgGCc -3'
miRNA:   3'- aCgGCCUGGu-GCGCUACa-GACAGgUG- -5'
31116 3' -57.4 NC_006560.1 + 1294 0.67 0.820774
Target:  5'- cGCCGGGCCGCcCGGguUCcGcCCGCa -3'
miRNA:   3'- aCGGCCUGGUGcGCUacAGaCaGGUG- -5'
31116 3' -57.4 NC_006560.1 + 78320 0.67 0.820774
Target:  5'- gGCCcucGGGCCAgCGCG-UG-CUgGUCCGCg -3'
miRNA:   3'- aCGG---CCUGGU-GCGCuACaGA-CAGGUG- -5'
31116 3' -57.4 NC_006560.1 + 39314 0.67 0.820774
Target:  5'- gGCCGGGCgGgGCGGUGgggCggggCCGCc -3'
miRNA:   3'- aCGGCCUGgUgCGCUACa--Gaca-GGUG- -5'
31116 3' -57.4 NC_006560.1 + 32015 0.67 0.812185
Target:  5'- -aCCGGcCCGCGCGggGUCuuuauUGUgCACu -3'
miRNA:   3'- acGGCCuGGUGCGCuaCAG-----ACAgGUG- -5'
31116 3' -57.4 NC_006560.1 + 55283 0.67 0.812185
Target:  5'- cGCCGGcCCacucgaGCGCGGUGgucaccugCUGgcCCACg -3'
miRNA:   3'- aCGGCCuGG------UGCGCUACa-------GACa-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.