miRNA display CGI


Results 1 - 20 of 501 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31116 5' -70.4 NC_006560.1 + 40318 0.66 0.356234
Target:  5'- gGGCGGgcgcGGCCccuucuccGGCCCggGCGGGgCCGa -3'
miRNA:   3'- gCCGCC----UCGGc-------CCGGG--CGCCCgGGCc -5'
31116 5' -70.4 NC_006560.1 + 28576 0.66 0.356234
Target:  5'- gCGGCGGAGCCaauGGUCCugaauuauucaCGGGgacgcCCCGGc -3'
miRNA:   3'- -GCCGCCUCGGc--CCGGGc----------GCCC-----GGGCC- -5'
31116 5' -70.4 NC_006560.1 + 39295 0.66 0.356234
Target:  5'- uCGGCGGcGuuGuGUCC-CGGGCCgGGc -3'
miRNA:   3'- -GCCGCCuCggCcCGGGcGCCCGGgCC- -5'
31116 5' -70.4 NC_006560.1 + 39877 0.66 0.356234
Target:  5'- uCGGCGGccaucgcgAGgCGGGUcuCCGUcguucGGGCCgGGg -3'
miRNA:   3'- -GCCGCC--------UCgGCCCG--GGCG-----CCCGGgCC- -5'
31116 5' -70.4 NC_006560.1 + 50266 0.66 0.356234
Target:  5'- gGGCG--GCCGGGCUcggCGCGccCCCGGg -3'
miRNA:   3'- gCCGCcuCGGCCCGG---GCGCccGGGCC- -5'
31116 5' -70.4 NC_006560.1 + 62362 0.66 0.356234
Target:  5'- gGGuCGGGGaCGGGgUCGCGGGggguggcggcUCCGGu -3'
miRNA:   3'- gCC-GCCUCgGCCCgGGCGCCC----------GGGCC- -5'
31116 5' -70.4 NC_006560.1 + 1110 0.66 0.356234
Target:  5'- gCGGCGcGAGCCccGCgaCGCGccccccuccGGCCCGGc -3'
miRNA:   3'- -GCCGC-CUCGGccCGg-GCGC---------CCGGGCC- -5'
31116 5' -70.4 NC_006560.1 + 47185 0.66 0.356234
Target:  5'- aGG-GGGGCCgcuaccuccaGGGCCCGCGcGcGCgCCGc -3'
miRNA:   3'- gCCgCCUCGG----------CCCGGGCGC-C-CG-GGCc -5'
31116 5' -70.4 NC_006560.1 + 119549 0.66 0.356234
Target:  5'- -cGCGGgacccccauGGCCGGGCgcgCCGcCGGacagcGCCCGGc -3'
miRNA:   3'- gcCGCC---------UCGGCCCG---GGC-GCC-----CGGGCC- -5'
31116 5' -70.4 NC_006560.1 + 126363 0.66 0.355525
Target:  5'- uCGGCGuacaCGGGCUCGaCGGgggcgccGCCCGGg -3'
miRNA:   3'- -GCCGCcucgGCCCGGGC-GCC-------CGGGCC- -5'
31116 5' -70.4 NC_006560.1 + 10462 0.66 0.349189
Target:  5'- aCGcGCgGGGGCCacgccGCCuCG-GGGCCCGGg -3'
miRNA:   3'- -GC-CG-CCUCGGcc---CGG-GCgCCCGGGCC- -5'
31116 5' -70.4 NC_006560.1 + 24073 0.66 0.349189
Target:  5'- gCGGCGcucaccGCCcgcccGCCCgGCGGGCCCGa -3'
miRNA:   3'- -GCCGCcu----CGGcc---CGGG-CGCCCGGGCc -5'
31116 5' -70.4 NC_006560.1 + 124253 0.66 0.349189
Target:  5'- cCGGaCGucGAGCCGugguGGUCCGCGGucgcgauCCCGGa -3'
miRNA:   3'- -GCC-GC--CUCGGC----CCGGGCGCCc------GGGCC- -5'
31116 5' -70.4 NC_006560.1 + 41988 0.66 0.349189
Target:  5'- gGGCGGGGaCGGGgaggcacaCCCGCaGGCCg-- -3'
miRNA:   3'- gCCGCCUCgGCCC--------GGGCGcCCGGgcc -5'
31116 5' -70.4 NC_006560.1 + 22704 0.66 0.349189
Target:  5'- gGGCGcGAcGCCacGGGCcgcuucacggCCGCGcGGCCgCGGc -3'
miRNA:   3'- gCCGC-CU-CGG--CCCG----------GGCGC-CCGG-GCC- -5'
31116 5' -70.4 NC_006560.1 + 34791 0.66 0.349189
Target:  5'- uCGGgGGcuGCgGGGuUCCGCGGcGCggCCGGg -3'
miRNA:   3'- -GCCgCCu-CGgCCC-GGGCGCC-CG--GGCC- -5'
31116 5' -70.4 NC_006560.1 + 51366 0.66 0.349189
Target:  5'- gGGaCGGAgGCCGGcCgCCGCGcGCUCGGc -3'
miRNA:   3'- gCC-GCCU-CGGCCcG-GGCGCcCGGGCC- -5'
31116 5' -70.4 NC_006560.1 + 89766 0.66 0.349189
Target:  5'- uGGCcGucgucGUCGGGuCCCGCacgaccGGGCUCGGg -3'
miRNA:   3'- gCCGcCu----CGGCCC-GGGCG------CCCGGGCC- -5'
31116 5' -70.4 NC_006560.1 + 124576 0.66 0.349189
Target:  5'- gCGGCgGGGGCUGacgacGGCCUcgacgcucaaguGgGGGCcCCGGg -3'
miRNA:   3'- -GCCG-CCUCGGC-----CCGGG------------CgCCCG-GGCC- -5'
31116 5' -70.4 NC_006560.1 + 142446 0.66 0.349189
Target:  5'- gCGGCGGccGCgCGGcCCCGCaGGUgCGGc -3'
miRNA:   3'- -GCCGCCu-CG-GCCcGGGCGcCCGgGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.