miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31118 3' -57.5 NC_006560.1 + 127384 0.66 0.864879
Target:  5'- cGCCCGGaaGAAGUGAgcggcgaugAGCagCCCCaGGAg -3'
miRNA:   3'- -UGGGUC--CUUCACU---------UUGagGGGGcCCU- -5'
31118 3' -57.5 NC_006560.1 + 6642 0.66 0.864879
Target:  5'- gGCUCGGGggGaccgGggGCUCgggggCUCGGGGg -3'
miRNA:   3'- -UGGGUCCuuCa---CuuUGAGg----GGGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 6759 0.66 0.864879
Target:  5'- gGCUCGGGggGaccgGggGCUCgggggCUCGGGGg -3'
miRNA:   3'- -UGGGUCCuuCa---CuuUGAGg----GGGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 6792 0.66 0.864879
Target:  5'- gGCUCGGGggGaccgGggGCUCgggggCUCGGGGg -3'
miRNA:   3'- -UGGGUCCuuCa---CuuUGAGg----GGGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 11116 0.66 0.860372
Target:  5'- --gCGGGggGggGggGCUCagcgggcgucgagggCCCCGGGGc -3'
miRNA:   3'- uggGUCCuuCa-CuuUGAG---------------GGGGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 46337 0.66 0.857326
Target:  5'- cGCCCAGGGu----AGCUCCgCgGGGGa -3'
miRNA:   3'- -UGGGUCCUucacuUUGAGGgGgCCCU- -5'
31118 3' -57.5 NC_006560.1 + 15022 0.66 0.857326
Target:  5'- cGCCCGcGggGUgcggcgucgGAGACUCgCgCCGGGGg -3'
miRNA:   3'- -UGGGUcCuuCA---------CUUUGAGgG-GGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 6717 0.66 0.857326
Target:  5'- gGCUCGGGggGaccgGggGCUCggggggaCCGGGGg -3'
miRNA:   3'- -UGGGUCCuuCa---CuuUGAGgg-----GGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 53595 0.66 0.857326
Target:  5'- cGCCCGGGAcgccggccgGGaGAgcgucGACUCCCUCGGc- -3'
miRNA:   3'- -UGGGUCCU---------UCaCU-----UUGAGGGGGCCcu -5'
31118 3' -57.5 NC_006560.1 + 32643 0.66 0.849573
Target:  5'- cGCCCAgGGGAG-GAGGC-CgCCCGGcGGc -3'
miRNA:   3'- -UGGGU-CCUUCaCUUUGaGgGGGCC-CU- -5'
31118 3' -57.5 NC_006560.1 + 100571 0.66 0.849573
Target:  5'- gGCCCGcGAA--GAAGggCCCCCGGGGg -3'
miRNA:   3'- -UGGGUcCUUcaCUUUgaGGGGGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 32597 0.66 0.841627
Target:  5'- nACaCGGGggGcgGggGCUgCCCCaGGGGc -3'
miRNA:   3'- -UGgGUCCuuCa-CuuUGAgGGGG-CCCU- -5'
31118 3' -57.5 NC_006560.1 + 34960 0.66 0.833494
Target:  5'- gGCCCGGGcgcc-GGGCUCCgCCGGGc -3'
miRNA:   3'- -UGGGUCCuucacUUUGAGGgGGCCCu -5'
31118 3' -57.5 NC_006560.1 + 149593 0.66 0.833494
Target:  5'- cCCCAGGAccgcaGGcGGGACcacccacggaCCCCGGGAc -3'
miRNA:   3'- uGGGUCCU-----UCaCUUUGag--------GGGGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 6562 0.66 0.833494
Target:  5'- gGCUCGGGggGacgGggGCUCgggggCUCGGGGg -3'
miRNA:   3'- -UGGGUCCuuCa--CuuUGAGg----GGGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 35384 0.66 0.833494
Target:  5'- cGCCaCAGGggG-GGAGCUCCagcggCCGGc- -3'
miRNA:   3'- -UGG-GUCCuuCaCUUUGAGGg----GGCCcu -5'
31118 3' -57.5 NC_006560.1 + 45280 0.66 0.832671
Target:  5'- uGCCCcGGggGUacgcgcgGAgGACgccgUCCCCGGGGa -3'
miRNA:   3'- -UGGGuCCuuCA-------CU-UUGa---GGGGGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 10487 0.66 0.825182
Target:  5'- gGCCCGGGgcG-GggGC-CCCgUCGGGu -3'
miRNA:   3'- -UGGGUCCuuCaCuuUGaGGG-GGCCCu -5'
31118 3' -57.5 NC_006560.1 + 80449 0.66 0.825182
Target:  5'- gGCCCGGGAAGacccGGGCUCCCacuuCGGa- -3'
miRNA:   3'- -UGGGUCCUUCac--UUUGAGGGg---GCCcu -5'
31118 3' -57.5 NC_006560.1 + 76918 0.67 0.816697
Target:  5'- cGCCCgccuccgggAGGAGGUGGuggcccGGgUCCCgUGGGAg -3'
miRNA:   3'- -UGGG---------UCCUUCACU------UUgAGGGgGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.