miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31118 3' -57.5 NC_006560.1 + 134439 0.67 0.81584
Target:  5'- cGCCCAGGGcccGGcUGAcggcgcgGGCggCCCCCGcGGGc -3'
miRNA:   3'- -UGGGUCCU---UC-ACU-------UUGa-GGGGGC-CCU- -5'
31118 3' -57.5 NC_006560.1 + 127604 0.67 0.808048
Target:  5'- gACCUGGccGAGUGGG--UCCCCCGGGu -3'
miRNA:   3'- -UGGGUCc-UUCACUUugAGGGGGCCCu -5'
31118 3' -57.5 NC_006560.1 + 142729 0.67 0.799243
Target:  5'- cGCCCGGGggGcccggcGGAGCccggCgCCCGGGc -3'
miRNA:   3'- -UGGGUCCuuCa-----CUUUGa---GgGGGCCCu -5'
31118 3' -57.5 NC_006560.1 + 50239 0.67 0.790289
Target:  5'- cCCCGGGAAcGUGGccgccGCgCCUCCGGGc -3'
miRNA:   3'- uGGGUCCUU-CACUu----UGaGGGGGCCCu -5'
31118 3' -57.5 NC_006560.1 + 78716 0.67 0.790289
Target:  5'- uGCUguGGGAGcGGcccGACcCCCCCGGGc -3'
miRNA:   3'- -UGGguCCUUCaCU---UUGaGGGGGCCCu -5'
31118 3' -57.5 NC_006560.1 + 14899 0.67 0.781196
Target:  5'- gGCCCGGGuc--GggGC-CCCUgGGGAa -3'
miRNA:   3'- -UGGGUCCuucaCuuUGaGGGGgCCCU- -5'
31118 3' -57.5 NC_006560.1 + 103110 0.67 0.781196
Target:  5'- gACCCGGcGgcGgacgcgGggGCggcgcgCCCCCGGGc -3'
miRNA:   3'- -UGGGUC-CuuCa-----CuuUGa-----GGGGGCCCu -5'
31118 3' -57.5 NC_006560.1 + 19538 0.68 0.771971
Target:  5'- aGCCCGGGgcGUu---CUCCUCCGGcGGc -3'
miRNA:   3'- -UGGGUCCuuCAcuuuGAGGGGGCC-CU- -5'
31118 3' -57.5 NC_006560.1 + 97401 0.68 0.771971
Target:  5'- cCCCGGGGAG-GcgGC-CaCCCCGGGc -3'
miRNA:   3'- uGGGUCCUUCaCuuUGaG-GGGGCCCu -5'
31118 3' -57.5 NC_006560.1 + 31816 0.68 0.771971
Target:  5'- gACCCGuagggacgcGGggGUGggGCUCgCCgcgcgacgcgCGGGGg -3'
miRNA:   3'- -UGGGU---------CCuuCACuuUGAGgGG----------GCCCU- -5'
31118 3' -57.5 NC_006560.1 + 26389 0.68 0.771971
Target:  5'- -gCCGGGgcGcaGggGCgcgCCCCCGGGc -3'
miRNA:   3'- ugGGUCCuuCa-CuuUGa--GGGGGCCCu -5'
31118 3' -57.5 NC_006560.1 + 66710 0.68 0.762624
Target:  5'- gGCCCGGGggGgcguGCUgCCgggccagggCCGGGAa -3'
miRNA:   3'- -UGGGUCCuuCacuuUGAgGG---------GGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 142507 0.68 0.762624
Target:  5'- cGCCCGGGcccc--GGCgCCCCCGGGGc -3'
miRNA:   3'- -UGGGUCCuucacuUUGaGGGGGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 118359 0.68 0.762624
Target:  5'- cGCCgGGGcGGUGcucgcGGGCcuggagCCCCCGGGGg -3'
miRNA:   3'- -UGGgUCCuUCAC-----UUUGa-----GGGGGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 28807 0.68 0.743599
Target:  5'- cGCCCAGcGggGagagcccGGAAgaUCCCCGGGGg -3'
miRNA:   3'- -UGGGUC-CuuCa------CUUUgaGGGGGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 149543 0.68 0.743599
Target:  5'- cCCCAGGAccgcaGGcGAGACcacccacggaCCCCGGGAc -3'
miRNA:   3'- uGGGUCCU-----UCaCUUUGag--------GGGGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 32682 0.68 0.743599
Target:  5'- gGCCCAGaGGgccgGGgccgGggGCUCCgCCCGaGGGc -3'
miRNA:   3'- -UGGGUC-CU----UCa---CuuUGAGG-GGGC-CCU- -5'
31118 3' -57.5 NC_006560.1 + 26905 0.68 0.733938
Target:  5'- -gCCGGGAcgggGGUGAcuGGCcgCCCgCCGGGGa -3'
miRNA:   3'- ugGGUCCU----UCACU--UUGa-GGG-GGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 99717 0.68 0.733938
Target:  5'- cGCCCGGGuGGgGggGCgcguacgCCgCCGGGGc -3'
miRNA:   3'- -UGGGUCCuUCaCuuUGa------GGgGGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 99759 0.68 0.733938
Target:  5'- cGCCCGGGuGGgGggGCgcguacgCCgCCGGGGc -3'
miRNA:   3'- -UGGGUCCuUCaCuuUGa------GGgGGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.