miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31118 3' -57.5 NC_006560.1 + 127384 0.66 0.864879
Target:  5'- cGCCCGGaaGAAGUGAgcggcgaugAGCagCCCCaGGAg -3'
miRNA:   3'- -UGGGUC--CUUCACU---------UUGagGGGGcCCU- -5'
31118 3' -57.5 NC_006560.1 + 149730 0.73 0.476306
Target:  5'- cCCCAGGAucgcAGgcgGGAACgaccaccgaCCCCCGGGGc -3'
miRNA:   3'- uGGGUCCU----UCa--CUUUGa--------GGGGGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 32563 0.73 0.485684
Target:  5'- cCCCAGGggGgcgGggGCcagagCCCCCcgcaGGGAc -3'
miRNA:   3'- uGGGUCCuuCa--CuuUGa----GGGGG----CCCU- -5'
31118 3' -57.5 NC_006560.1 + 66223 0.72 0.514322
Target:  5'- aACgCCAGGuAGaGAAACgcggCCCCCGGGc -3'
miRNA:   3'- -UG-GGUCCuUCaCUUUGa---GGGGGCCCu -5'
31118 3' -57.5 NC_006560.1 + 35638 0.72 0.514322
Target:  5'- cGCCCGGccucGggGUGcgcgGAGgUUCCCCGGGAg -3'
miRNA:   3'- -UGGGUC----CuuCAC----UUUgAGGGGGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 29128 0.72 0.523049
Target:  5'- cGCCCcuugGGGGAGUG-GGCUCCCggcgcauauaacgCCGGGGa -3'
miRNA:   3'- -UGGG----UCCUUCACuUUGAGGG-------------GGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 60628 0.72 0.524022
Target:  5'- cUCCGGG-AGUGcgGCUggaccCCCCCGGGGc -3'
miRNA:   3'- uGGGUCCuUCACuuUGA-----GGGGGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 50407 0.71 0.573451
Target:  5'- uACCCGGGcgcGGcgGggGCggagugCCCCCGGGc -3'
miRNA:   3'- -UGGGUCCu--UCa-CuuUGa-----GGGGGCCCu -5'
31118 3' -57.5 NC_006560.1 + 72245 0.71 0.573451
Target:  5'- -gCgAGGggGgcgGAGGgaCCCCCGGGAc -3'
miRNA:   3'- ugGgUCCuuCa--CUUUgaGGGGGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 47625 0.73 0.46702
Target:  5'- cGCCCAGGAGGUGGAcgugGCcgUUCgCGGGAg -3'
miRNA:   3'- -UGGGUCCUUCACUU----UGa-GGGgGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 32231 0.73 0.439738
Target:  5'- gACaCAGGggGcGGAGCccCCCCCGGGGa -3'
miRNA:   3'- -UGgGUCCuuCaCUUUGa-GGGGGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 98809 0.74 0.428201
Target:  5'- cGCCCGGGggG-GAucugguagggcaGACcccaucccacccccUCCCCCGGGGg -3'
miRNA:   3'- -UGGGUCCuuCaCU------------UUG--------------AGGGGGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 54872 0.81 0.170745
Target:  5'- cGCCCGGGAGccGcGAGACgCCCCCGGGGg -3'
miRNA:   3'- -UGGGUCCUU--CaCUUUGaGGGGGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 32427 0.78 0.240692
Target:  5'- cGCCCAGGggGccggggggccGggGCUCCCCCacGGGGc -3'
miRNA:   3'- -UGGGUCCuuCa---------CuuUGAGGGGG--CCCU- -5'
31118 3' -57.5 NC_006560.1 + 35788 0.77 0.297305
Target:  5'- cGCCCGGGAGGcgGcuGCggucgCCCCCGGGu -3'
miRNA:   3'- -UGGGUCCUUCa-CuuUGa----GGGGGCCCu -5'
31118 3' -57.5 NC_006560.1 + 32464 0.76 0.325605
Target:  5'- -gCCGGGGGcUGcGGGCUCCCCCGGGGc -3'
miRNA:   3'- ugGGUCCUUcAC-UUUGAGGGGGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 105104 0.76 0.328543
Target:  5'- gGCCCGGGAAGggGAGcgggaccgcuacuggGC-CCCCCGGGu -3'
miRNA:   3'- -UGGGUCCUUCa-CUU---------------UGaGGGGGCCCu -5'
31118 3' -57.5 NC_006560.1 + 32881 0.75 0.355858
Target:  5'- gGCCCGGGGAGgccgcgggGggGCgcgCCCgCGGGGu -3'
miRNA:   3'- -UGGGUCCUUCa-------CuuUGa--GGGgGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 124367 0.75 0.371709
Target:  5'- cCCCuGGAcGUGGAGC-CCCUCGGGGc -3'
miRNA:   3'- uGGGuCCUuCACUUUGaGGGGGCCCU- -5'
31118 3' -57.5 NC_006560.1 + 4542 0.74 0.413388
Target:  5'- cGCCCcGGggGcgGggGCUCggCCCCGGGc -3'
miRNA:   3'- -UGGGuCCuuCa-CuuUGAG--GGGGCCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.