miRNA display CGI


Results 1 - 20 of 370 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31118 5' -64.7 NC_006560.1 + 141706 0.66 0.556975
Target:  5'- aCCCCCuccgggGGGggGGCGaagguggcgggaaaGUuaacaagccCCGCCCCc -3'
miRNA:   3'- aGGGGG------UCCuuCCGCgg------------CA---------GGCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 92341 0.66 0.556033
Target:  5'- gCCCaCCAGccuccAGGCgGCCG-CCGCCUg -3'
miRNA:   3'- aGGG-GGUCcu---UCCG-CGGCaGGCGGGg -5'
31118 5' -64.7 NC_006560.1 + 68921 0.66 0.556033
Target:  5'- gCCgCgAGGAGGuGCGCgUGUcggCCGCCCUc -3'
miRNA:   3'- aGGgGgUCCUUC-CGCG-GCA---GGCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 3918 0.66 0.556033
Target:  5'- gUCCCCCuccuccgccgcgGGGgcGGCGCCG-CgGUCg- -3'
miRNA:   3'- -AGGGGG------------UCCuuCCGCGGCaGgCGGgg -5'
31118 5' -64.7 NC_006560.1 + 32882 0.66 0.556033
Target:  5'- --gCCCGGGGAGGcCGCgGgggggCgCGCCCg -3'
miRNA:   3'- aggGGGUCCUUCC-GCGgCa----G-GCGGGg -5'
31118 5' -64.7 NC_006560.1 + 79014 0.66 0.556033
Target:  5'- cCCUCCcGGccGGCGCCGgcgaUCC-UCCCg -3'
miRNA:   3'- aGGGGGuCCuuCCGCGGC----AGGcGGGG- -5'
31118 5' -64.7 NC_006560.1 + 120552 0.66 0.556033
Target:  5'- aUCCgCCGGGu-GGCGCC-UCUGCgCg -3'
miRNA:   3'- -AGGgGGUCCuuCCGCGGcAGGCGgGg -5'
31118 5' -64.7 NC_006560.1 + 43890 0.66 0.555093
Target:  5'- --aCCCAGGGccuccugcagcgcGGGaCGUCGUCCGCgCg -3'
miRNA:   3'- aggGGGUCCU-------------UCC-GCGGCAGGCGgGg -5'
31118 5' -64.7 NC_006560.1 + 109750 0.66 0.555093
Target:  5'- -gUCCCAGGGgacacucGGccGCGCag-CCGCCCCg -3'
miRNA:   3'- agGGGGUCCU-------UC--CGCGgcaGGCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 95718 0.66 0.555093
Target:  5'- gCCUCCguguaccggugcgGGGAAGuGgaGCUGcgCCGCCCCg -3'
miRNA:   3'- aGGGGG-------------UCCUUC-Cg-CGGCa-GGCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 142616 0.66 0.555093
Target:  5'- -gCCCCAGGuGAGcGCGCgGgCCcagauggGCCCCc -3'
miRNA:   3'- agGGGGUCC-UUC-CGCGgCaGG-------CGGGG- -5'
31118 5' -64.7 NC_006560.1 + 83330 0.66 0.553212
Target:  5'- -aCCCUggucgccgggggcgAGGAGGGCGCgGgcggCgGCCCg -3'
miRNA:   3'- agGGGG--------------UCCUUCCGCGgCa---GgCGGGg -5'
31118 5' -64.7 NC_006560.1 + 1528 0.66 0.546647
Target:  5'- -gCCCCGGGcgcGCGcCCGgccacgCCGUCCCc -3'
miRNA:   3'- agGGGGUCCuucCGC-GGCa-----GGCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 15479 0.66 0.546647
Target:  5'- gUCCuCCUGGGucGGCGacgcgcUCGgggccCCGCCCCc -3'
miRNA:   3'- -AGG-GGGUCCuuCCGC------GGCa----GGCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 53967 0.66 0.546647
Target:  5'- cUCCCgCGGccgauGGAGGagGCCGgggagCCGCCCa -3'
miRNA:   3'- -AGGGgGUC-----CUUCCg-CGGCa----GGCGGGg -5'
31118 5' -64.7 NC_006560.1 + 148326 0.66 0.546647
Target:  5'- aCCCCCAGGAcccccaccuGGGCGgaggagcgacCCGgg-GCUCCg -3'
miRNA:   3'- aGGGGGUCCU---------UCCGC----------GGCaggCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 48600 0.66 0.546647
Target:  5'- aCCgCCAGGc-GGCGCUcaaGggaCGCCCCc -3'
miRNA:   3'- aGGgGGUCCuuCCGCGG---Cag-GCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 114950 0.66 0.546647
Target:  5'- gCCCCC------GCGCUGcgCCGCCCCa -3'
miRNA:   3'- aGGGGGuccuucCGCGGCa-GGCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 83091 0.66 0.546647
Target:  5'- gCgCCCGGGGggccacccucguGGGUG-CGUUCGCCCg -3'
miRNA:   3'- aGgGGGUCCU------------UCCGCgGCAGGCGGGg -5'
31118 5' -64.7 NC_006560.1 + 46082 0.66 0.546647
Target:  5'- --gCCCAGcccGAGGCGgCG-CCGCCCg -3'
miRNA:   3'- aggGGGUCc--UUCCGCgGCaGGCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.