miRNA display CGI


Results 1 - 20 of 370 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31118 5' -64.7 NC_006560.1 + 12183 1.11 0.000377
Target:  5'- gUCCCCCAGGAAGGCGCCGUCCGCCCCg -3'
miRNA:   3'- -AGGGGGUCCUUCCGCGGCAGGCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 50209 0.86 0.024273
Target:  5'- gCCCCCGGGcggcggcGGCGCgCGUCCGCCCCc -3'
miRNA:   3'- aGGGGGUCCuu-----CCGCG-GCAGGCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 15977 0.83 0.043803
Target:  5'- gUgCCCGGaGAGGGCGCCGccCCGCCCCg -3'
miRNA:   3'- aGgGGGUC-CUUCCGCGGCa-GGCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 130998 0.83 0.043803
Target:  5'- -gCCCCGGGggGGCGCCGUcgaccacuucgCCGUCCUg -3'
miRNA:   3'- agGGGGUCCuuCCGCGGCA-----------GGCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 105586 0.82 0.046095
Target:  5'- aUCCCUCGGG-GGGCGCCGccccggaggCCGCCCCc -3'
miRNA:   3'- -AGGGGGUCCuUCCGCGGCa--------GGCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 34952 0.82 0.052351
Target:  5'- gCCCCCGGGGcccGGGCGCCGggcUCCGCCg- -3'
miRNA:   3'- aGGGGGUCCU---UCCGCGGC---AGGCGGgg -5'
31118 5' -64.7 NC_006560.1 + 997 0.82 0.052351
Target:  5'- cUCgCCCCGGccgGGGCGCCGucUCCGCCCCg -3'
miRNA:   3'- -AG-GGGGUCcu-UCCGCGGC--AGGCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 62617 0.8 0.074566
Target:  5'- ---gCgGGGAGGGUGCCGUCCGCCCUc -3'
miRNA:   3'- agggGgUCCUUCCGCGGCAGGCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 138491 0.79 0.078402
Target:  5'- gCCCCCccGAGGGCgagGCCGgggcgCCGCCCCg -3'
miRNA:   3'- aGGGGGucCUUCCG---CGGCa----GGCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 32534 0.79 0.086646
Target:  5'- cCCCCCAGGGAGGCGgggaGUgCgGCCCCc -3'
miRNA:   3'- aGGGGGUCCUUCCGCgg--CA-GgCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 122650 0.78 0.091072
Target:  5'- gCCCgCGGGggGGcCGCUGaccgCCGCCCCc -3'
miRNA:   3'- aGGGgGUCCuuCC-GCGGCa---GGCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 134416 0.78 0.098114
Target:  5'- gCCCgCCcGGGAGGCGUCGUCCucGCCCa -3'
miRNA:   3'- aGGG-GGuCCUUCCGCGGCAGG--CGGGg -5'
31118 5' -64.7 NC_006560.1 + 100664 0.78 0.100574
Target:  5'- gCCCCgCGGGggGgaGCGCCG-CCGCCaCCg -3'
miRNA:   3'- aGGGG-GUCCuuC--CGCGGCaGGCGG-GG- -5'
31118 5' -64.7 NC_006560.1 + 60277 0.78 0.103092
Target:  5'- gCCCCCGGGcccGGCGCCaaGcCCGCCCUc -3'
miRNA:   3'- aGGGGGUCCuu-CCGCGG--CaGGCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 72262 0.77 0.105669
Target:  5'- aCCCCCGGGAccgcgcgggGGGCGaCGucgagaccUCCGCCCCc -3'
miRNA:   3'- aGGGGGUCCU---------UCCGCgGC--------AGGCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 149353 0.77 0.105669
Target:  5'- cUCCCCgccgCGGGGAGGaGCCGggcggcgCCGCCCCc -3'
miRNA:   3'- -AGGGG----GUCCUUCCgCGGCa------GGCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 145152 0.77 0.108307
Target:  5'- cCCCCCuGGggGGgGCCGcacuccCCGCCUCc -3'
miRNA:   3'- aGGGGGuCCuuCCgCGGCa-----GGCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 21686 0.77 0.113768
Target:  5'- aUCCUCgAcGGgcGGCGCCGccggCCGCCCCc -3'
miRNA:   3'- -AGGGGgU-CCuuCCGCGGCa---GGCGGGG- -5'
31118 5' -64.7 NC_006560.1 + 42548 0.77 0.114891
Target:  5'- gCCCCggggucgcgCGGGGAGGCGCCcgccgcggcggccacGUCCGCCgCCg -3'
miRNA:   3'- aGGGG---------GUCCUUCCGCGG---------------CAGGCGG-GG- -5'
31118 5' -64.7 NC_006560.1 + 51785 0.77 0.116595
Target:  5'- cCCCCCGGcGGcGGGCGCCGggaCCgugGCCCCg -3'
miRNA:   3'- aGGGGGUC-CU-UCCGCGGCa--GG---CGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.