miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31119 3' -64.3 NC_006560.1 + 150147 0.66 0.50548
Target:  5'- cCGGCGGGCGCGcGCgacaCGGaaGGCCGCg -3'
miRNA:   3'- -GUCGUCCGCGU-CGagggGUC--CCGGUG- -5'
31119 3' -64.3 NC_006560.1 + 33638 0.66 0.50548
Target:  5'- gCGGgGGGCGCcgggGGCggCCgC-GGGCCGCu -3'
miRNA:   3'- -GUCgUCCGCG----UCGa-GGgGuCCCGGUG- -5'
31119 3' -64.3 NC_006560.1 + 54929 0.66 0.50548
Target:  5'- gGGCcGGgGCGGCcaUCgUCGGGGCuCGCg -3'
miRNA:   3'- gUCGuCCgCGUCG--AGgGGUCCCG-GUG- -5'
31119 3' -64.3 NC_006560.1 + 42936 0.66 0.50548
Target:  5'- gUAGCGcGGCGcCGGCUccagCCCCgcgGGGGCgUACg -3'
miRNA:   3'- -GUCGU-CCGC-GUCGA----GGGG---UCCCG-GUG- -5'
31119 3' -64.3 NC_006560.1 + 149097 0.66 0.50548
Target:  5'- gGGCGGGCGCcggGGCgUCCCCgugaauaauucAGGaCCAUu -3'
miRNA:   3'- gUCGUCCGCG---UCG-AGGGG-----------UCCcGGUG- -5'
31119 3' -64.3 NC_006560.1 + 64138 0.66 0.50548
Target:  5'- gCAGCugcucguguaGGGCcgGCGGgUCCCCAGGcCCAg -3'
miRNA:   3'- -GUCG----------UCCG--CGUCgAGGGGUCCcGGUg -5'
31119 3' -64.3 NC_006560.1 + 73857 0.66 0.50548
Target:  5'- aCAGCgccaAGGCGCuGCUggCCGGGGacgcCCGCg -3'
miRNA:   3'- -GUCG----UCCGCGuCGAggGGUCCC----GGUG- -5'
31119 3' -64.3 NC_006560.1 + 68043 0.66 0.50548
Target:  5'- -uGCAGGCucugcuGCGGgcccugacCUCCCUGGcGGCCGCc -3'
miRNA:   3'- guCGUCCG------CGUC--------GAGGGGUC-CCGGUG- -5'
31119 3' -64.3 NC_006560.1 + 17994 0.66 0.50548
Target:  5'- gAGCGGGCGCG--UCCUggagAGGGCgCACg -3'
miRNA:   3'- gUCGUCCGCGUcgAGGGg---UCCCG-GUG- -5'
31119 3' -64.3 NC_006560.1 + 10250 0.66 0.50548
Target:  5'- -cGCGGGuCGCGGCggCCCCGGccucGGCUc- -3'
miRNA:   3'- guCGUCC-GCGUCGa-GGGGUC----CCGGug -5'
31119 3' -64.3 NC_006560.1 + 84700 0.66 0.50548
Target:  5'- -cGCGGGCGacgGGCgCCUCGGcGCCACc -3'
miRNA:   3'- guCGUCCGCg--UCGaGGGGUCcCGGUG- -5'
31119 3' -64.3 NC_006560.1 + 131117 0.66 0.50548
Target:  5'- uGGCGGGgGCcuGGC-CCgcggCCGGGGCgCGCg -3'
miRNA:   3'- gUCGUCCgCG--UCGaGG----GGUCCCG-GUG- -5'
31119 3' -64.3 NC_006560.1 + 96918 0.66 0.504544
Target:  5'- cCGGCAGGuCGaCGGCUacuacgagcgcgaCCUCucgacGGGCCGCc -3'
miRNA:   3'- -GUCGUCC-GC-GUCGA-------------GGGGu----CCCGGUG- -5'
31119 3' -64.3 NC_006560.1 + 10465 0.66 0.49616
Target:  5'- -cGCGGGgGCcacGCcgCCUCGGGGCC-Cg -3'
miRNA:   3'- guCGUCCgCGu--CGa-GGGGUCCCGGuG- -5'
31119 3' -64.3 NC_006560.1 + 29066 0.66 0.49616
Target:  5'- cCGGCcGGCGgGGCccgCCCguCGGGGaCCGCc -3'
miRNA:   3'- -GUCGuCCGCgUCGa--GGG--GUCCC-GGUG- -5'
31119 3' -64.3 NC_006560.1 + 147611 0.66 0.49616
Target:  5'- aGGCcGGgGCcGcCUCCCCGGGGagGCg -3'
miRNA:   3'- gUCGuCCgCGuC-GAGGGGUCCCggUG- -5'
31119 3' -64.3 NC_006560.1 + 40951 0.66 0.49616
Target:  5'- uCGGgGGGCGCccGCUCCCCcgacagcagcAGGaGCgACu -3'
miRNA:   3'- -GUCgUCCGCGu-CGAGGGG----------UCC-CGgUG- -5'
31119 3' -64.3 NC_006560.1 + 149829 0.66 0.49616
Target:  5'- aGGCGGccuCGCGGC-CCCC--GGCCGCg -3'
miRNA:   3'- gUCGUCc--GCGUCGaGGGGucCCGGUG- -5'
31119 3' -64.3 NC_006560.1 + 3640 0.66 0.49616
Target:  5'- aCGGC-GGCGaCGGCggCCUCGGcGCCGCc -3'
miRNA:   3'- -GUCGuCCGC-GUCGa-GGGGUCcCGGUG- -5'
31119 3' -64.3 NC_006560.1 + 133811 0.66 0.49616
Target:  5'- aAGCAGcGCaGCAGCUCgugcuCCCAGaGGCgCGa -3'
miRNA:   3'- gUCGUC-CG-CGUCGAG-----GGGUC-CCG-GUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.