miRNA display CGI


Results 21 - 40 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31119 3' -64.3 NC_006560.1 + 40951 0.66 0.49616
Target:  5'- uCGGgGGGCGCccGCUCCCCcgacagcagcAGGaGCgACu -3'
miRNA:   3'- -GUCgUCCGCGu-CGAGGGG----------UCC-CGgUG- -5'
31119 3' -64.3 NC_006560.1 + 117708 0.66 0.486919
Target:  5'- aGGUAcuGGCGCcuGCggUCCCGGGGCgGCc -3'
miRNA:   3'- gUCGU--CCGCGu-CGa-GGGGUCCCGgUG- -5'
31119 3' -64.3 NC_006560.1 + 54864 0.66 0.486919
Target:  5'- cCGGgAGGCGCccgggAGCcgcgagacgCCCCcgGGGGCCAg -3'
miRNA:   3'- -GUCgUCCGCG-----UCGa--------GGGG--UCCCGGUg -5'
31119 3' -64.3 NC_006560.1 + 99726 0.66 0.486919
Target:  5'- gGGgGGGCGCGuacGC-CgCCGGGGCCcCg -3'
miRNA:   3'- gUCgUCCGCGU---CGaGgGGUCCCGGuG- -5'
31119 3' -64.3 NC_006560.1 + 99768 0.66 0.486919
Target:  5'- gGGgGGGCGCGuacGC-CgCCGGGGCCcCa -3'
miRNA:   3'- gUCgUCCGCGU---CGaGgGGUCCCGGuG- -5'
31119 3' -64.3 NC_006560.1 + 26296 0.66 0.486919
Target:  5'- uGGCGGGCgGCuuCUgCCCCgucGGcGGCCGCg -3'
miRNA:   3'- gUCGUCCG-CGucGA-GGGG---UC-CCGGUG- -5'
31119 3' -64.3 NC_006560.1 + 101973 0.66 0.486919
Target:  5'- gGGCAGGCGCuccAGCaggCCCgcgaAGGaGCCGg -3'
miRNA:   3'- gUCGUCCGCG---UCGa--GGGg---UCC-CGGUg -5'
31119 3' -64.3 NC_006560.1 + 134204 0.66 0.486919
Target:  5'- -uGCuGGCGCGGg-CCCgCGGGGUCGg -3'
miRNA:   3'- guCGuCCGCGUCgaGGG-GUCCCGGUg -5'
31119 3' -64.3 NC_006560.1 + 138798 0.66 0.486919
Target:  5'- aGGCGGGUggacguGCGGCg-CCUGGGGaCCACc -3'
miRNA:   3'- gUCGUCCG------CGUCGagGGGUCCC-GGUG- -5'
31119 3' -64.3 NC_006560.1 + 144525 0.66 0.486919
Target:  5'- -cGCGGGCcccuuccccGCGGCcgccuUCCCCGcGGGCCc- -3'
miRNA:   3'- guCGUCCG---------CGUCG-----AGGGGU-CCCGGug -5'
31119 3' -64.3 NC_006560.1 + 55697 0.66 0.485999
Target:  5'- gGGCGGGCGCcaGGCccgCCCgcgccuccgacguCAGGGUCGa -3'
miRNA:   3'- gUCGUCCGCG--UCGa--GGG-------------GUCCCGGUg -5'
31119 3' -64.3 NC_006560.1 + 26157 0.66 0.47776
Target:  5'- gCGGCAGGgGCcccGC-CCCCGGGGa-GCc -3'
miRNA:   3'- -GUCGUCCgCGu--CGaGGGGUCCCggUG- -5'
31119 3' -64.3 NC_006560.1 + 119504 0.66 0.47776
Target:  5'- cCGGgAGGUGCcuccGggCCgCGGGGCCGCg -3'
miRNA:   3'- -GUCgUCCGCGu---CgaGGgGUCCCGGUG- -5'
31119 3' -64.3 NC_006560.1 + 75151 0.66 0.47776
Target:  5'- gCGGCGgcGGUGCGGCgggagaaCCCCGaGGCCGa -3'
miRNA:   3'- -GUCGU--CCGCGUCGa------GGGGUcCCGGUg -5'
31119 3' -64.3 NC_006560.1 + 81406 0.66 0.47776
Target:  5'- cCAGCgaGGGCGCGcGCcaccaCCCGcGGGCCGg -3'
miRNA:   3'- -GUCG--UCCGCGU-CGag---GGGU-CCCGGUg -5'
31119 3' -64.3 NC_006560.1 + 105641 0.66 0.47776
Target:  5'- cCGGgAcGGCGCccccgucgaccGGgaCCCCGGGGCCuACu -3'
miRNA:   3'- -GUCgU-CCGCG-----------UCgaGGGGUCCCGG-UG- -5'
31119 3' -64.3 NC_006560.1 + 134864 0.66 0.47776
Target:  5'- --cCAGGCGCuGCgucacuUCCCCcucgcGGGGCCGg -3'
miRNA:   3'- gucGUCCGCGuCG------AGGGG-----UCCCGGUg -5'
31119 3' -64.3 NC_006560.1 + 11616 0.66 0.47776
Target:  5'- cCGGCGGGgGagucGCUUCCgGGGGCUcgGCg -3'
miRNA:   3'- -GUCGUCCgCgu--CGAGGGgUCCCGG--UG- -5'
31119 3' -64.3 NC_006560.1 + 36512 0.66 0.47776
Target:  5'- gAGgAGGgGCGGCUacauucacuacCUCCAGGGUUGCc -3'
miRNA:   3'- gUCgUCCgCGUCGA-----------GGGGUCCCGGUG- -5'
31119 3' -64.3 NC_006560.1 + 24116 0.66 0.47776
Target:  5'- gCGGCuGGCGCcGCgcgCCgCCcGGGCC-Cg -3'
miRNA:   3'- -GUCGuCCGCGuCGa--GG-GGuCCCGGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.