miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31119 3' -64.3 NC_006560.1 + 1892 0.71 0.246038
Target:  5'- -cGCGGGCgGCGGCgccggcuaccagUCCUCGGcGGCCGCc -3'
miRNA:   3'- guCGUCCG-CGUCG------------AGGGGUC-CCGGUG- -5'
31119 3' -64.3 NC_006560.1 + 1972 0.69 0.300083
Target:  5'- gGGCGGGgGCggGGCUCggggccgggccagcUCCAGGGCgGCg -3'
miRNA:   3'- gUCGUCCgCG--UCGAG--------------GGGUCCCGgUG- -5'
31119 3' -64.3 NC_006560.1 + 2059 0.68 0.366731
Target:  5'- cCAGCGcacgcgcGGCGCGGCggcggggUCCgGGGGCCcgGCg -3'
miRNA:   3'- -GUCGU-------CCGCGUCGa------GGGgUCCCGG--UG- -5'
31119 3' -64.3 NC_006560.1 + 2400 0.67 0.407832
Target:  5'- gCGGCAcGGCGguGUcgggCCCCAGGcGCgugCGCa -3'
miRNA:   3'- -GUCGU-CCGCguCGa---GGGGUCC-CG---GUG- -5'
31119 3' -64.3 NC_006560.1 + 2663 0.66 0.49616
Target:  5'- uCGGCGGGC-CA-CUCCUCGGGcGgCACg -3'
miRNA:   3'- -GUCGUCCGcGUcGAGGGGUCC-CgGUG- -5'
31119 3' -64.3 NC_006560.1 + 3028 0.69 0.302101
Target:  5'- gCGGCGcGGCGCAGCgggCCCgAGGcGCggaGCg -3'
miRNA:   3'- -GUCGU-CCGCGUCGa--GGGgUCC-CGg--UG- -5'
31119 3' -64.3 NC_006560.1 + 3059 0.69 0.329292
Target:  5'- nCGGCccgaGGGCGCGGCcggagCCCgGcucgggcGGGCCGCa -3'
miRNA:   3'- -GUCG----UCCGCGUCGa----GGGgU-------CCCGGUG- -5'
31119 3' -64.3 NC_006560.1 + 3229 0.67 0.399548
Target:  5'- gCGGCGGGCgGCGGCgugugggcgggCCCgGGcGGCgCGCg -3'
miRNA:   3'- -GUCGUCCG-CGUCGa----------GGGgUC-CCG-GUG- -5'
31119 3' -64.3 NC_006560.1 + 3304 0.66 0.468687
Target:  5'- gGGCGGGCGguGagcgCCgcgggCCGGGGgCGCg -3'
miRNA:   3'- gUCGUCCGCguCga--GG-----GGUCCCgGUG- -5'
31119 3' -64.3 NC_006560.1 + 3427 0.71 0.234813
Target:  5'- gCGGCGGGCGCgGGCgCCCgCGGGGgCGa -3'
miRNA:   3'- -GUCGUCCGCG-UCGaGGG-GUCCCgGUg -5'
31119 3' -64.3 NC_006560.1 + 3640 0.66 0.49616
Target:  5'- aCGGC-GGCGaCGGCggCCUCGGcGCCGCc -3'
miRNA:   3'- -GUCGuCCGC-GUCGa-GGGGUCcCGGUG- -5'
31119 3' -64.3 NC_006560.1 + 3716 0.67 0.399548
Target:  5'- gCAcCAGGCGCAGCUCgCgCAGccaGGCgCGCg -3'
miRNA:   3'- -GUcGUCCGCGUCGAGgG-GUC---CCG-GUG- -5'
31119 3' -64.3 NC_006560.1 + 3756 0.69 0.308905
Target:  5'- -cGCGGGCGCGGCggcgCCgCGcggcGGGaCCGCg -3'
miRNA:   3'- guCGUCCGCGUCGa---GGgGU----CCC-GGUG- -5'
31119 3' -64.3 NC_006560.1 + 3904 0.68 0.382506
Target:  5'- uCGGC-GGCGuCGGCgUCCCCcuccuccgccgcgGGGGCgGCg -3'
miRNA:   3'- -GUCGuCCGC-GUCG-AGGGG-------------UCCCGgUG- -5'
31119 3' -64.3 NC_006560.1 + 4017 0.72 0.208628
Target:  5'- aGGCcggGGGCgGCGGCggcgUCCCGGGGCgGCg -3'
miRNA:   3'- gUCG---UCCG-CGUCGa---GGGGUCCCGgUG- -5'
31119 3' -64.3 NC_006560.1 + 4296 0.67 0.433316
Target:  5'- aAGCAGGCGCGGUccagCUCCAcgucgccGGCCGu -3'
miRNA:   3'- gUCGUCCGCGUCGa---GGGGUc------CCGGUg -5'
31119 3' -64.3 NC_006560.1 + 4550 0.67 0.433316
Target:  5'- gGGCGGGgGCucggCCCC-GGGCCAg -3'
miRNA:   3'- gUCGUCCgCGucgaGGGGuCCCGGUg -5'
31119 3' -64.3 NC_006560.1 + 4878 0.67 0.399548
Target:  5'- aCGGC-GGCgGCGGCgCCggCgGGGGCCGCg -3'
miRNA:   3'- -GUCGuCCG-CGUCGaGG--GgUCCCGGUG- -5'
31119 3' -64.3 NC_006560.1 + 5145 0.71 0.251815
Target:  5'- -cGC-GGCGCGGggCCcgggCCGGGGCCGCg -3'
miRNA:   3'- guCGuCCGCGUCgaGG----GGUCCCGGUG- -5'
31119 3' -64.3 NC_006560.1 + 5647 0.66 0.459703
Target:  5'- gGGC-GGCGCccggccGGCUccgCCCCGGGGCgCGg -3'
miRNA:   3'- gUCGuCCGCG------UCGA---GGGGUCCCG-GUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.