miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31119 5' -59.8 NC_006560.1 + 4102 0.66 0.735689
Target:  5'- -cGCGGCgCaGGcUGGCGGcgaggaagcccuUCUGCGCg -3'
miRNA:   3'- auCGCCG-GcCCuACCGCU------------AGACGUGa -5'
31119 5' -59.8 NC_006560.1 + 76471 0.66 0.735689
Target:  5'- aGGCGGCCGagcuGGAcccgggGGCGGUCgacuggcuggaGCACg -3'
miRNA:   3'- aUCGCCGGC----CCUa-----CCGCUAGa----------CGUGa -5'
31119 5' -59.8 NC_006560.1 + 19397 0.66 0.735689
Target:  5'- -cGCGGCaCGGGccgGGCGAgUCgccgcggcgGCGCUc -3'
miRNA:   3'- auCGCCG-GCCCua-CCGCU-AGa--------CGUGA- -5'
31119 5' -59.8 NC_006560.1 + 109161 0.66 0.735689
Target:  5'- uUGGCGaucucGCCGGGccGGCGGUCgcguggGCGg- -3'
miRNA:   3'- -AUCGC-----CGGCCCuaCCGCUAGa-----CGUga -5'
31119 5' -59.8 NC_006560.1 + 87712 0.66 0.73278
Target:  5'- uUGGCGGCCacgGGGAaGGCGGccucgUCcuccccgcccgccuUGCACUc -3'
miRNA:   3'- -AUCGCCGG---CCCUaCCGCU-----AG--------------ACGUGA- -5'
31119 5' -59.8 NC_006560.1 + 124431 0.66 0.731809
Target:  5'- aGGaGGCgGGGAUGGuCGAUCgcggucucggcggGCACc -3'
miRNA:   3'- aUCgCCGgCCCUACC-GCUAGa------------CGUGa -5'
31119 5' -59.8 NC_006560.1 + 103114 0.66 0.729864
Target:  5'- cGGCGGCggacgCGGGGgcggcgcgcccccgGGCGcccUCUGCGCg -3'
miRNA:   3'- aUCGCCG-----GCCCUa-------------CCGCu--AGACGUGa -5'
31119 5' -59.8 NC_006560.1 + 14771 0.66 0.725963
Target:  5'- cGGCGGgaGGGGUGGgGGcggGCACg -3'
miRNA:   3'- aUCGCCggCCCUACCgCUagaCGUGa -5'
31119 5' -59.8 NC_006560.1 + 21032 0.66 0.725963
Target:  5'- gGGCgGGCCGGGGcggGGCGccc-GCGCg -3'
miRNA:   3'- aUCG-CCGGCCCUa--CCGCuagaCGUGa -5'
31119 5' -59.8 NC_006560.1 + 109309 0.66 0.725963
Target:  5'- -cGCGGCCGGGGUgGGUGGagUGgGu- -3'
miRNA:   3'- auCGCCGGCCCUA-CCGCUagACgUga -5'
31119 5' -59.8 NC_006560.1 + 59010 0.66 0.724986
Target:  5'- -uGCGGaCCGGGccGGCGcgCUggccgccGCGCa -3'
miRNA:   3'- auCGCC-GGCCCuaCCGCuaGA-------CGUGa -5'
31119 5' -59.8 NC_006560.1 + 113000 0.66 0.72009
Target:  5'- -cGCGGgCGGGcacgaccccgucuacGUGGCGGcCUGCAa- -3'
miRNA:   3'- auCGCCgGCCC---------------UACCGCUaGACGUga -5'
31119 5' -59.8 NC_006560.1 + 133515 0.66 0.716159
Target:  5'- -cGcCGGCCGGGGUcGGCGGcuUCgUGgGCg -3'
miRNA:   3'- auC-GCCGGCCCUA-CCGCU--AG-ACgUGa -5'
31119 5' -59.8 NC_006560.1 + 147053 0.66 0.716159
Target:  5'- gGGCGGCgGGGGgaGGCGggCgGCGa- -3'
miRNA:   3'- aUCGCCGgCCCUa-CCGCuaGaCGUga -5'
31119 5' -59.8 NC_006560.1 + 27639 0.66 0.716159
Target:  5'- -cGCGGCCGGGc--GCGGg--GCGCg -3'
miRNA:   3'- auCGCCGGCCCuacCGCUagaCGUGa -5'
31119 5' -59.8 NC_006560.1 + 2079 0.66 0.716159
Target:  5'- cGGCGGgguCCGGGGgcccGGCG-UCgGCGCg -3'
miRNA:   3'- aUCGCC---GGCCCUa---CCGCuAGaCGUGa -5'
31119 5' -59.8 NC_006560.1 + 33652 0.66 0.716159
Target:  5'- gGGCGGCCGcGGGccgcuuaGGCGAgcccggcgggcgUCUGCGg- -3'
miRNA:   3'- aUCGCCGGC-CCUa------CCGCU------------AGACGUga -5'
31119 5' -59.8 NC_006560.1 + 102321 0.66 0.706284
Target:  5'- gUAGCGcaGCgGGGGgucguugcGGaCGAUCUGCACc -3'
miRNA:   3'- -AUCGC--CGgCCCUa-------CC-GCUAGACGUGa -5'
31119 5' -59.8 NC_006560.1 + 39219 0.66 0.706284
Target:  5'- gGGCGuGUCGGGAggGGCGAcCgcgaGCGCc -3'
miRNA:   3'- aUCGC-CGGCCCUa-CCGCUaGa---CGUGa -5'
31119 5' -59.8 NC_006560.1 + 31952 0.66 0.706284
Target:  5'- gGGCGGCCGGGcgGGg-----GCGCg -3'
miRNA:   3'- aUCGCCGGCCCuaCCgcuagaCGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.