miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31119 5' -59.8 NC_006560.1 + 102321 0.66 0.706284
Target:  5'- gUAGCGcaGCgGGGGgucguugcGGaCGAUCUGCACc -3'
miRNA:   3'- -AUCGC--CGgCCCUa-------CC-GCUAGACGUGa -5'
31119 5' -59.8 NC_006560.1 + 108515 0.66 0.706284
Target:  5'- gGGCGGCCGGc--GGCGGgccCggggGCGCg -3'
miRNA:   3'- aUCGCCGGCCcuaCCGCUa--Ga---CGUGa -5'
31119 5' -59.8 NC_006560.1 + 43421 0.66 0.696348
Target:  5'- cGGC-GCCGGGGgcgucGGCGcgCgGCACg -3'
miRNA:   3'- aUCGcCGGCCCUa----CCGCuaGaCGUGa -5'
31119 5' -59.8 NC_006560.1 + 50266 0.66 0.696348
Target:  5'- gGGCGGCCGGGcucGGCGcgCccccggggGUACc -3'
miRNA:   3'- aUCGCCGGCCCua-CCGCuaGa-------CGUGa -5'
31119 5' -59.8 NC_006560.1 + 15350 0.66 0.696348
Target:  5'- -cGCGGCCGGGGUcGCGGUgagGC-Cg -3'
miRNA:   3'- auCGCCGGCCCUAcCGCUAga-CGuGa -5'
31119 5' -59.8 NC_006560.1 + 64843 0.66 0.696348
Target:  5'- gAGCaGGCUGGGGUcGCGcgCgccgGCGCg -3'
miRNA:   3'- aUCG-CCGGCCCUAcCGCuaGa---CGUGa -5'
31119 5' -59.8 NC_006560.1 + 5513 0.66 0.696348
Target:  5'- -cGCGGCgaGGGucggcGGCGGUC-GCGCUc -3'
miRNA:   3'- auCGCCGg-CCCua---CCGCUAGaCGUGA- -5'
31119 5' -59.8 NC_006560.1 + 2541 0.66 0.686359
Target:  5'- -cGCGGCCGGa--GGCGAgcacgGCGCg -3'
miRNA:   3'- auCGCCGGCCcuaCCGCUaga--CGUGa -5'
31119 5' -59.8 NC_006560.1 + 105795 0.66 0.686359
Target:  5'- -cGUGGCCGc--UGGCGGUCUGgGCc -3'
miRNA:   3'- auCGCCGGCccuACCGCUAGACgUGa -5'
31119 5' -59.8 NC_006560.1 + 125035 0.67 0.676326
Target:  5'- cGGCGGCUGGuGGcgcGGCGGUCgccgGCGg- -3'
miRNA:   3'- aUCGCCGGCC-CUa--CCGCUAGa---CGUga -5'
31119 5' -59.8 NC_006560.1 + 122465 0.67 0.676326
Target:  5'- cGGCGGucuuCCGGGA-GGCGGg--GCACc -3'
miRNA:   3'- aUCGCC----GGCCCUaCCGCUagaCGUGa -5'
31119 5' -59.8 NC_006560.1 + 120544 0.67 0.676326
Target:  5'- cGGCccgaauccGCCGGG-UGGCGccUCUGCGCg -3'
miRNA:   3'- aUCGc-------CGGCCCuACCGCu-AGACGUGa -5'
31119 5' -59.8 NC_006560.1 + 11643 0.67 0.666258
Target:  5'- cGGCGGuCCGGGcgGGCGGgggaGuCGCUu -3'
miRNA:   3'- aUCGCC-GGCCCuaCCGCUaga-C-GUGA- -5'
31119 5' -59.8 NC_006560.1 + 15173 0.67 0.656162
Target:  5'- -cGCGGUCGGGAUcacgGGCG-UC-GCGCc -3'
miRNA:   3'- auCGCCGGCCCUA----CCGCuAGaCGUGa -5'
31119 5' -59.8 NC_006560.1 + 15874 0.67 0.656162
Target:  5'- cGGCGGCgUGGGGgccGGCGAcCgGCGCc -3'
miRNA:   3'- aUCGCCG-GCCCUa--CCGCUaGaCGUGa -5'
31119 5' -59.8 NC_006560.1 + 136241 0.67 0.646048
Target:  5'- -cGCGGCCGGGcugcgacccGUGcUGGUCUGCGu- -3'
miRNA:   3'- auCGCCGGCCC---------UACcGCUAGACGUga -5'
31119 5' -59.8 NC_006560.1 + 137208 0.67 0.646048
Target:  5'- cGGCGGCCGGGGagcgGGCGuUCgacuucaaGaCGCUg -3'
miRNA:   3'- aUCGCCGGCCCUa---CCGCuAGa-------C-GUGA- -5'
31119 5' -59.8 NC_006560.1 + 132323 0.67 0.646048
Target:  5'- -cGCGGCCGGGGcgcacGCGGUCgcgGgGCg -3'
miRNA:   3'- auCGCCGGCCCUac---CGCUAGa--CgUGa -5'
31119 5' -59.8 NC_006560.1 + 1160 0.67 0.646048
Target:  5'- cUGGCGGCCGGGuucucuGCGGaccgCUcGCACg -3'
miRNA:   3'- -AUCGCCGGCCCuac---CGCUa---GA-CGUGa -5'
31119 5' -59.8 NC_006560.1 + 26478 0.67 0.635923
Target:  5'- gAGCGGCCGGcGGccccGGCGGggggCggGCGCg -3'
miRNA:   3'- aUCGCCGGCC-CUa---CCGCUa---Ga-CGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.