miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31119 5' -59.8 NC_006560.1 + 19397 0.66 0.735689
Target:  5'- -cGCGGCaCGGGccgGGCGAgUCgccgcggcgGCGCUc -3'
miRNA:   3'- auCGCCG-GCCCua-CCGCU-AGa--------CGUGA- -5'
31119 5' -59.8 NC_006560.1 + 135312 0.71 0.432637
Target:  5'- -cGUGGUCGGGGUGGgGugggcCUGCACc -3'
miRNA:   3'- auCGCCGGCCCUACCgCua---GACGUGa -5'
31119 5' -59.8 NC_006560.1 + 149918 0.71 0.432637
Target:  5'- cGGCGGCCGGGcgcGGCG-UCgguggccGCACUc -3'
miRNA:   3'- aUCGCCGGCCCua-CCGCuAGa------CGUGA- -5'
31119 5' -59.8 NC_006560.1 + 66706 0.7 0.478163
Target:  5'- cGGCGGcCCGGGggGGCGugCUGC-Cg -3'
miRNA:   3'- aUCGCC-GGCCCuaCCGCuaGACGuGa -5'
31119 5' -59.8 NC_006560.1 + 42483 0.7 0.481908
Target:  5'- gGGCGGUCGaGGG-GGCGGUCacgggguuccgcgcgUGCACg -3'
miRNA:   3'- aUCGCCGGC-CCUaCCGCUAG---------------ACGUGa -5'
31119 5' -59.8 NC_006560.1 + 3374 0.7 0.481908
Target:  5'- cGGCGGgCGGGcgGGCGGgcgcgggccggcucuUCuUGCGCg -3'
miRNA:   3'- aUCGCCgGCCCuaCCGCU---------------AG-ACGUGa -5'
31119 5' -59.8 NC_006560.1 + 11682 0.7 0.497026
Target:  5'- cGGCGGuCCGGGcgGGCGGgaUCgGCGu- -3'
miRNA:   3'- aUCGCC-GGCCCuaCCGCU--AGaCGUga -5'
31119 5' -59.8 NC_006560.1 + 116531 0.7 0.500839
Target:  5'- aGGCGGgCGGcGAUGGCGAcggccgaguccuggCUGCugUu -3'
miRNA:   3'- aUCGCCgGCC-CUACCGCUa-------------GACGugA- -5'
31119 5' -59.8 NC_006560.1 + 74093 0.69 0.516217
Target:  5'- cUGGCGGCCuGGcUGGCGucgCUGgGCg -3'
miRNA:   3'- -AUCGCCGGcCCuACCGCua-GACgUGa -5'
31119 5' -59.8 NC_006560.1 + 94448 0.71 0.406564
Target:  5'- aGGCGGCgCGGGcgcGCGcgCUGCGCg -3'
miRNA:   3'- aUCGCCG-GCCCuacCGCuaGACGUGa -5'
31119 5' -59.8 NC_006560.1 + 88755 0.71 0.406564
Target:  5'- -cGCGGCCGGGggGGCG----GCGCg -3'
miRNA:   3'- auCGCCGGCCCuaCCGCuagaCGUGa -5'
31119 5' -59.8 NC_006560.1 + 130516 0.72 0.38974
Target:  5'- cGGCGGCCGGccGGUGGCGccgCgcgGCGCc -3'
miRNA:   3'- aUCGCCGGCC--CUACCGCua-Ga--CGUGa -5'
31119 5' -59.8 NC_006560.1 + 131534 0.8 0.111299
Target:  5'- cGGCGGCCGGcGAcguggaccUGGCGGUCUGCGg- -3'
miRNA:   3'- aUCGCCGGCC-CU--------ACCGCUAGACGUga -5'
31119 5' -59.8 NC_006560.1 + 18559 0.79 0.1403
Target:  5'- gGGUGGUCGGGgcGGCGGaccUCUGCGCg -3'
miRNA:   3'- aUCGCCGGCCCuaCCGCU---AGACGUGa -5'
31119 5' -59.8 NC_006560.1 + 150193 0.73 0.319155
Target:  5'- cGGCGGCCGagagugaGGGUGGCGAgc-GCGCg -3'
miRNA:   3'- aUCGCCGGC-------CCUACCGCUagaCGUGa -5'
31119 5' -59.8 NC_006560.1 + 147275 0.72 0.357488
Target:  5'- cUGGCGGCCGGGGccgGGCGGgggGCuCUg -3'
miRNA:   3'- -AUCGCCGGCCCUa--CCGCUagaCGuGA- -5'
31119 5' -59.8 NC_006560.1 + 102847 0.72 0.365373
Target:  5'- cGGCGGuuGGGGaaUGGCGAgccggGCGCg -3'
miRNA:   3'- aUCGCCggCCCU--ACCGCUaga--CGUGa -5'
31119 5' -59.8 NC_006560.1 + 9860 0.72 0.372572
Target:  5'- aUGGCGGCguccguggggcacCGGGggGGCGGcacgCUGCGCg -3'
miRNA:   3'- -AUCGCCG-------------GCCCuaCCGCUa---GACGUGa -5'
31119 5' -59.8 NC_006560.1 + 99619 0.72 0.384782
Target:  5'- gGGCGGCUGGcgguccgcggcGAUggcgccgaccagcgcGGCGAUCUGCGCc -3'
miRNA:   3'- aUCGCCGGCC-----------CUA---------------CCGCUAGACGUGa -5'
31119 5' -59.8 NC_006560.1 + 97063 0.72 0.38974
Target:  5'- aAGUGGCgGGaGGUGGaCGAgaugCUGCGCg -3'
miRNA:   3'- aUCGCCGgCC-CUACC-GCUa---GACGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.