miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3112 3' -55.5 NC_001493.1 + 36854 0.67 0.891617
Target:  5'- aCGGGAUgCCAUC-GGGc-CGUUGUGg -3'
miRNA:   3'- gGCUCUGgGGUAGaCCCuuGCAGCAC- -5'
3112 3' -55.5 NC_001493.1 + 78148 0.67 0.884147
Target:  5'- cCCGAGACCUCAacgUCccuccguUGGucACGUCGUu -3'
miRNA:   3'- -GGCUCUGGGGU---AG-------ACCcuUGCAGCAc -5'
3112 3' -55.5 NC_001493.1 + 14902 0.67 0.870618
Target:  5'- -aGGGGCCCCGga-GGGAGCGgugCGg- -3'
miRNA:   3'- ggCUCUGGGGUagaCCCUUGCa--GCac -5'
3112 3' -55.5 NC_001493.1 + 130456 0.67 0.870618
Target:  5'- -aGGGGCCCCGga-GGGAGCGgugCGg- -3'
miRNA:   3'- ggCUCUGGGGUagaCCCUUGCa--GCac -5'
3112 3' -55.5 NC_001493.1 + 91620 0.68 0.855551
Target:  5'- gCGGGcgcACCCUccGUCUGGGAACGgggaUCGg- -3'
miRNA:   3'- gGCUC---UGGGG--UAGACCCUUGC----AGCac -5'
3112 3' -55.5 NC_001493.1 + 128829 0.7 0.750404
Target:  5'- aCCGGGGCUCCAgUCUcGGGAucucUCGUGg -3'
miRNA:   3'- -GGCUCUGGGGU-AGA-CCCUugc-AGCAC- -5'
3112 3' -55.5 NC_001493.1 + 13275 0.7 0.750404
Target:  5'- aCCGGGGCUCCAgUCUcGGGAucucUCGUGg -3'
miRNA:   3'- -GGCUCUGGGGU-AGA-CCCUugc-AGCAC- -5'
3112 3' -55.5 NC_001493.1 + 22866 0.71 0.711315
Target:  5'- -aGAGACCgCAUCUGuuGAuaGCGUCGUGc -3'
miRNA:   3'- ggCUCUGGgGUAGACc-CU--UGCAGCAC- -5'
3112 3' -55.5 NC_001493.1 + 115712 0.72 0.610137
Target:  5'- gCGAGACCCCAa--GGGGGCGUgGg- -3'
miRNA:   3'- gGCUCUGGGGUagaCCCUUGCAgCac -5'
3112 3' -55.5 NC_001493.1 + 158 0.72 0.610137
Target:  5'- gCGAGACCCCAa--GGGGGCGUgGg- -3'
miRNA:   3'- gGCUCUGGGGUagaCCCUUGCAgCac -5'
3112 3' -55.5 NC_001493.1 + 78291 0.73 0.569676
Target:  5'- cUCG-GGCCCCAgaCUGGcacGGGCGUCGUGg -3'
miRNA:   3'- -GGCuCUGGGGUa-GACC---CUUGCAGCAC- -5'
3112 3' -55.5 NC_001493.1 + 130812 0.78 0.336691
Target:  5'- aCCGGGGCgCCAUCacgGGGAACGUCu-- -3'
miRNA:   3'- -GGCUCUGgGGUAGa--CCCUUGCAGcac -5'
3112 3' -55.5 NC_001493.1 + 15258 0.78 0.336691
Target:  5'- aCCGGGGCgCCAUCacgGGGAACGUCu-- -3'
miRNA:   3'- -GGCUCUGgGGUAGa--CCCUUGCAGcac -5'
3112 3' -55.5 NC_001493.1 + 102502 1.11 0.002379
Target:  5'- aCCGAGACCCCAUCUGGGAACGUCGUGg -3'
miRNA:   3'- -GGCUCUGGGGUAGACCCUUGCAGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.