miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3112 5' -57.6 NC_001493.1 + 89741 0.66 0.807334
Target:  5'- --aACGGCGCCCGUCACGaCGuuCGGUc -3'
miRNA:   3'- aagUGCUGUGGGCGGUGCgGUu-GCUA- -5'
3112 5' -57.6 NC_001493.1 + 102304 0.66 0.798332
Target:  5'- gUCGCGACcccccgACCCGCCGagGCCccaccuuccaccAGCGAa -3'
miRNA:   3'- aAGUGCUG------UGGGCGGUg-CGG------------UUGCUa -5'
3112 5' -57.6 NC_001493.1 + 95202 0.66 0.797424
Target:  5'- --gGCGuuACCCGCUaccauauaccuggGCGCCAugGAc -3'
miRNA:   3'- aagUGCugUGGGCGG-------------UGCGGUugCUa -5'
3112 5' -57.6 NC_001493.1 + 125116 0.66 0.779879
Target:  5'- cUCACGGCcuACCaCGCgGugcuCGCCGACGGg -3'
miRNA:   3'- aAGUGCUG--UGG-GCGgU----GCGGUUGCUa -5'
3112 5' -57.6 NC_001493.1 + 9562 0.66 0.779879
Target:  5'- cUCACGGCcuACCaCGCgGugcuCGCCGACGGg -3'
miRNA:   3'- aAGUGCUG--UGG-GCGgU----GCGGUUGCUa -5'
3112 5' -57.6 NC_001493.1 + 57499 0.66 0.779879
Target:  5'- -aCGCGGCcaGCCCGCCcuCGCCGAg--- -3'
miRNA:   3'- aaGUGCUG--UGGGCGGu-GCGGUUgcua -5'
3112 5' -57.6 NC_001493.1 + 20996 0.67 0.760885
Target:  5'- ---uCGGCGCCgCGCCGCGCCuccucaGAUg -3'
miRNA:   3'- aaguGCUGUGG-GCGGUGCGGuug---CUA- -5'
3112 5' -57.6 NC_001493.1 + 69135 0.67 0.731544
Target:  5'- -aCGCcACGUCCGCCACGUUGACGGUu -3'
miRNA:   3'- aaGUGcUGUGGGCGGUGCGGUUGCUA- -5'
3112 5' -57.6 NC_001493.1 + 103367 0.67 0.73055
Target:  5'- aUCACGGggggaaACCCGCCccauaucugguucGCGCCAuCGAa -3'
miRNA:   3'- aAGUGCUg-----UGGGCGG-------------UGCGGUuGCUa -5'
3112 5' -57.6 NC_001493.1 + 106508 0.67 0.721574
Target:  5'- cUgGCgGugGCCCGgCACGCCAugGCGGc -3'
miRNA:   3'- aAgUG-CugUGGGCgGUGCGGU--UGCUa -5'
3112 5' -57.6 NC_001493.1 + 39494 0.67 0.715555
Target:  5'- gUCAgCGuCACCCGCguCACGCCGgaucccaccagacccGCGAUg -3'
miRNA:   3'- aAGU-GCuGUGGGCG--GUGCGGU---------------UGCUA- -5'
3112 5' -57.6 NC_001493.1 + 62724 0.68 0.70141
Target:  5'- -cCACGACggcgaaGCCCGCgGgaGCCAACGGc -3'
miRNA:   3'- aaGUGCUG------UGGGCGgUg-CGGUUGCUa -5'
3112 5' -57.6 NC_001493.1 + 62766 0.68 0.70141
Target:  5'- -cCACGACggcgaaGCCCGCgGgaGCCAACGGc -3'
miRNA:   3'- aaGUGCUG------UGGGCGgUg-CGGUUGCUa -5'
3112 5' -57.6 NC_001493.1 + 62682 0.68 0.70141
Target:  5'- -cCACGACggcgaaGCCCGCgGgaGCCAACGGc -3'
miRNA:   3'- aaGUGCUG------UGGGCGgUg-CGGUUGCUa -5'
3112 5' -57.6 NC_001493.1 + 62808 0.68 0.70141
Target:  5'- -cCACGACggcgaaGCCCGCgGgaGCCAACGGc -3'
miRNA:   3'- aaGUGCUG------UGGGCGgUg-CGGUUGCUa -5'
3112 5' -57.6 NC_001493.1 + 72660 0.68 0.691235
Target:  5'- aUCACGGUcgUCGCCACGCCAuCGAg -3'
miRNA:   3'- aAGUGCUGugGGCGGUGCGGUuGCUa -5'
3112 5' -57.6 NC_001493.1 + 83451 0.68 0.681008
Target:  5'- aUCAUGuuAUCCGCCA-GCCAGCGu- -3'
miRNA:   3'- aAGUGCugUGGGCGGUgCGGUUGCua -5'
3112 5' -57.6 NC_001493.1 + 77737 0.68 0.650119
Target:  5'- gUCAUGG-ACCgCGCCAUGCCcACGAc -3'
miRNA:   3'- aAGUGCUgUGG-GCGGUGCGGuUGCUa -5'
3112 5' -57.6 NC_001493.1 + 66022 0.69 0.608765
Target:  5'- -gCACGGCGaCCGCCGCGUCGAUa-- -3'
miRNA:   3'- aaGUGCUGUgGGCGGUGCGGUUGcua -5'
3112 5' -57.6 NC_001493.1 + 87184 0.7 0.577909
Target:  5'- gUCACcACACCCGCaGCGCCAccguCGGg -3'
miRNA:   3'- aAGUGcUGUGGGCGgUGCGGUu---GCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.