Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31120 | 3' | -56 | NC_006560.1 | + | 10395 | 1.1 | 0.002918 |
Target: 5'- cAGGACGUACAUCCCGCUGUCGCUCGGu -3' miRNA: 3'- -UCCUGCAUGUAGGGCGACAGCGAGCC- -5' |
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31120 | 3' | -56 | NC_006560.1 | + | 39057 | 0.77 | 0.376724 |
Target: 5'- gGGGugGUGCAUCgCCGCgg-CGCUgCGGc -3' miRNA: 3'- -UCCugCAUGUAG-GGCGacaGCGA-GCC- -5' |
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31120 | 3' | -56 | NC_006560.1 | + | 58173 | 0.75 | 0.445156 |
Target: 5'- cGGGCGUACAcgccCCCGCgagccuccccGUCGCUCGa -3' miRNA: 3'- uCCUGCAUGUa---GGGCGa---------CAGCGAGCc -5' |
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31120 | 3' | -56 | NC_006560.1 | + | 96458 | 0.73 | 0.569214 |
Target: 5'- aAGGACGUGacCGUCUCGCagGUCugGUUCGGg -3' miRNA: 3'- -UCCUGCAU--GUAGGGCGa-CAG--CGAGCC- -5' |
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31120 | 3' | -56 | NC_006560.1 | + | 119466 | 0.73 | 0.569214 |
Target: 5'- gGGGACcccGCGUCCCGCg--CGCUCGu -3' miRNA: 3'- -UCCUGca-UGUAGGGCGacaGCGAGCc -5' |
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31120 | 3' | -56 | NC_006560.1 | + | 14217 | 0.71 | 0.680031 |
Target: 5'- cGGGCGggGCG-CCCGCgGUCGCggGGa -3' miRNA: 3'- uCCUGCa-UGUaGGGCGaCAGCGagCC- -5' |
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31120 | 3' | -56 | NC_006560.1 | + | 95862 | 0.7 | 0.719729 |
Target: 5'- cGGACGgcgGCAUcggCCCGCgGUCGgUCGu -3' miRNA: 3'- uCCUGCa--UGUA---GGGCGaCAGCgAGCc -5' |
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31120 | 3' | -56 | NC_006560.1 | + | 4394 | 0.7 | 0.748763 |
Target: 5'- gAGGGCGUACuggCgCGCggcGUCGCccagcUCGGg -3' miRNA: 3'- -UCCUGCAUGua-GgGCGa--CAGCG-----AGCC- -5' |
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31120 | 3' | -56 | NC_006560.1 | + | 93955 | 0.7 | 0.75447 |
Target: 5'- gAGGGCGaGCG-CCUGCUGggcugucuggaggCGUUCGGg -3' miRNA: 3'- -UCCUGCaUGUaGGGCGACa------------GCGAGCC- -5' |
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31120 | 3' | -56 | NC_006560.1 | + | 62881 | 0.69 | 0.776897 |
Target: 5'- uGGGGCGcaGCGUCUCGCcGUCGCgCGu -3' miRNA: 3'- -UCCUGCa-UGUAGGGCGaCAGCGaGCc -5' |
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31120 | 3' | -56 | NC_006560.1 | + | 45712 | 0.69 | 0.776897 |
Target: 5'- aGGuGACGUAgAUCCCGCggcgcaggCGCgccgCGGg -3' miRNA: 3'- -UC-CUGCAUgUAGGGCGaca-----GCGa---GCC- -5' |
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31120 | 3' | -56 | NC_006560.1 | + | 19580 | 0.69 | 0.795036 |
Target: 5'- cGGGCGgcgccGCggCCCGCUcGUCG-UCGGa -3' miRNA: 3'- uCCUGCa----UGuaGGGCGA-CAGCgAGCC- -5' |
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31120 | 3' | -56 | NC_006560.1 | + | 10432 | 0.69 | 0.795036 |
Target: 5'- cGGAgCGUcaGCGUCCCGUUGcucaCGCUCa- -3' miRNA: 3'- uCCU-GCA--UGUAGGGCGACa---GCGAGcc -5' |
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31120 | 3' | -56 | NC_006560.1 | + | 126249 | 0.69 | 0.803014 |
Target: 5'- cGGGCGUACGUgaccuccUCCGC-GUCGCU-GGc -3' miRNA: 3'- uCCUGCAUGUA-------GGGCGaCAGCGAgCC- -5' |
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31120 | 3' | -56 | NC_006560.1 | + | 27669 | 0.69 | 0.803893 |
Target: 5'- gAGGuCGUcCucgCCCGCcGUCGgUCGGg -3' miRNA: 3'- -UCCuGCAuGua-GGGCGaCAGCgAGCC- -5' |
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31120 | 3' | -56 | NC_006560.1 | + | 70188 | 0.69 | 0.812599 |
Target: 5'- cGGGGCGUGC-UCgCCGaccucGUCGCcCGGg -3' miRNA: 3'- -UCCUGCAUGuAG-GGCga---CAGCGaGCC- -5' |
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31120 | 3' | -56 | NC_006560.1 | + | 150233 | 0.68 | 0.821146 |
Target: 5'- cGGGCGUGCugguugCCCGCg--CuCUCGGg -3' miRNA: 3'- uCCUGCAUGua----GGGCGacaGcGAGCC- -5' |
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31120 | 3' | -56 | NC_006560.1 | + | 81379 | 0.68 | 0.837727 |
Target: 5'- cGGGCGgaACggCCCGCUGcUGC-CGGg -3' miRNA: 3'- uCCUGCa-UGuaGGGCGACaGCGaGCC- -5' |
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31120 | 3' | -56 | NC_006560.1 | + | 99132 | 0.68 | 0.837727 |
Target: 5'- cGGG-GUGCGUCUCGggGUCGC-CGGc -3' miRNA: 3'- uCCUgCAUGUAGGGCgaCAGCGaGCC- -5' |
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31120 | 3' | -56 | NC_006560.1 | + | 13150 | 0.68 | 0.837727 |
Target: 5'- cGGACGUAgGUcCCCGCgGUCuCgaaggCGGg -3' miRNA: 3'- uCCUGCAUgUA-GGGCGaCAGcGa----GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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