miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31120 3' -56 NC_006560.1 + 4394 0.7 0.748763
Target:  5'- gAGGGCGUACuggCgCGCggcGUCGCccagcUCGGg -3'
miRNA:   3'- -UCCUGCAUGua-GgGCGa--CAGCG-----AGCC- -5'
31120 3' -56 NC_006560.1 + 8730 0.66 0.925706
Target:  5'- -cGGCGgcCGUCUCGUcGUCGCUCu- -3'
miRNA:   3'- ucCUGCauGUAGGGCGaCAGCGAGcc -5'
31120 3' -56 NC_006560.1 + 10395 1.1 0.002918
Target:  5'- cAGGACGUACAUCCCGCUGUCGCUCGGu -3'
miRNA:   3'- -UCCUGCAUGUAGGGCGACAGCGAGCC- -5'
31120 3' -56 NC_006560.1 + 10432 0.69 0.795036
Target:  5'- cGGAgCGUcaGCGUCCCGUUGcucaCGCUCa- -3'
miRNA:   3'- uCCU-GCA--UGUAGGGCGACa---GCGAGcc -5'
31120 3' -56 NC_006560.1 + 13150 0.68 0.837727
Target:  5'- cGGACGUAgGUcCCCGCgGUCuCgaaggCGGg -3'
miRNA:   3'- uCCUGCAUgUA-GGGCGaCAGcGa----GCC- -5'
31120 3' -56 NC_006560.1 + 14217 0.71 0.680031
Target:  5'- cGGGCGggGCG-CCCGCgGUCGCggGGa -3'
miRNA:   3'- uCCUGCa-UGUaGGGCGaCAGCGagCC- -5'
31120 3' -56 NC_006560.1 + 19409 0.66 0.908728
Target:  5'- cGGGCGa--GUCgCCGCggcggCGCUCGGc -3'
miRNA:   3'- uCCUGCaugUAG-GGCGaca--GCGAGCC- -5'
31120 3' -56 NC_006560.1 + 19580 0.69 0.795036
Target:  5'- cGGGCGgcgccGCggCCCGCUcGUCG-UCGGa -3'
miRNA:   3'- uCCUGCa----UGuaGGGCGA-CAGCgAGCC- -5'
31120 3' -56 NC_006560.1 + 24397 0.68 0.845747
Target:  5'- gAGGACGUGCG-CgUGCUGgUGCUCu- -3'
miRNA:   3'- -UCCUGCAUGUaGgGCGACaGCGAGcc -5'
31120 3' -56 NC_006560.1 + 27669 0.69 0.803893
Target:  5'- gAGGuCGUcCucgCCCGCcGUCGgUCGGg -3'
miRNA:   3'- -UCCuGCAuGua-GGGCGaCAGCgAGCC- -5'
31120 3' -56 NC_006560.1 + 39057 0.77 0.376724
Target:  5'- gGGGugGUGCAUCgCCGCgg-CGCUgCGGc -3'
miRNA:   3'- -UCCugCAUGUAG-GGCGacaGCGA-GCC- -5'
31120 3' -56 NC_006560.1 + 39085 0.68 0.837727
Target:  5'- ---cCGaACGUCUCGCUGacgCGCUCGGc -3'
miRNA:   3'- uccuGCaUGUAGGGCGACa--GCGAGCC- -5'
31120 3' -56 NC_006560.1 + 39628 0.68 0.853578
Target:  5'- cGGGCGUcgGCGUCCgggcgcggCGgaGUcucCGCUCGGg -3'
miRNA:   3'- uCCUGCA--UGUAGG--------GCgaCA---GCGAGCC- -5'
31120 3' -56 NC_006560.1 + 43910 0.67 0.868647
Target:  5'- cGGGACGU-CGU-CCGCg--CGCUCGa -3'
miRNA:   3'- -UCCUGCAuGUAgGGCGacaGCGAGCc -5'
31120 3' -56 NC_006560.1 + 45712 0.69 0.776897
Target:  5'- aGGuGACGUAgAUCCCGCggcgcaggCGCgccgCGGg -3'
miRNA:   3'- -UC-CUGCAUgUAGGGCGaca-----GCGa---GCC- -5'
31120 3' -56 NC_006560.1 + 51244 0.66 0.920279
Target:  5'- uGGGCGcGCG-CCUGCacccgCGCUCGGc -3'
miRNA:   3'- uCCUGCaUGUaGGGCGaca--GCGAGCC- -5'
31120 3' -56 NC_006560.1 + 51365 0.66 0.9309
Target:  5'- cGGGACGgagGCcggCCGCcGcgCGCUCGGc -3'
miRNA:   3'- -UCCUGCa--UGuagGGCGaCa-GCGAGCC- -5'
31120 3' -56 NC_006560.1 + 58173 0.75 0.445156
Target:  5'- cGGGCGUACAcgccCCCGCgagccuccccGUCGCUCGa -3'
miRNA:   3'- uCCUGCAUGUa---GGGCGa---------CAGCGAGCc -5'
31120 3' -56 NC_006560.1 + 62881 0.69 0.776897
Target:  5'- uGGGGCGcaGCGUCUCGCcGUCGCgCGu -3'
miRNA:   3'- -UCCUGCa-UGUAGGGCGaCAGCGaGCc -5'
31120 3' -56 NC_006560.1 + 70188 0.69 0.812599
Target:  5'- cGGGGCGUGC-UCgCCGaccucGUCGCcCGGg -3'
miRNA:   3'- -UCCUGCAUGuAG-GGCga---CAGCGaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.