miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31120 5' -59 NC_006560.1 + 124350 0.66 0.806321
Target:  5'- uGCGGGGCGUcCGGCGaCCCc-UGgaCg -3'
miRNA:   3'- gCGCCUCGCA-GUCGCaGGGcaACgaG- -5'
31120 5' -59 NC_006560.1 + 69452 0.66 0.806321
Target:  5'- cCGCGGggcuGGCGgggGGCGUCCUGaggcagacGCUCg -3'
miRNA:   3'- -GCGCC----UCGCag-UCGCAGGGCaa------CGAG- -5'
31120 5' -59 NC_006560.1 + 148346 0.66 0.797585
Target:  5'- gGCGGAG-G--AGCGaCCCGggGCUCc -3'
miRNA:   3'- gCGCCUCgCagUCGCaGGGCaaCGAG- -5'
31120 5' -59 NC_006560.1 + 53365 0.66 0.797585
Target:  5'- -aUGGAGCG-CAGCGUCaaggCGUgGUUCg -3'
miRNA:   3'- gcGCCUCGCaGUCGCAGg---GCAaCGAG- -5'
31120 5' -59 NC_006560.1 + 125242 0.66 0.797585
Target:  5'- aGCGGcgucGCGUCGGaCGUgCUGcUGUUCg -3'
miRNA:   3'- gCGCCu---CGCAGUC-GCAgGGCaACGAG- -5'
31120 5' -59 NC_006560.1 + 40918 0.66 0.797585
Target:  5'- gCGCGGcacAGCGcggCGGgGUCCCGcgGgUCu -3'
miRNA:   3'- -GCGCC---UCGCa--GUCgCAGGGCaaCgAG- -5'
31120 5' -59 NC_006560.1 + 139042 0.66 0.797585
Target:  5'- uGgGGGGCucgCGGUGUCCCGgcccgUGC-Cg -3'
miRNA:   3'- gCgCCUCGca-GUCGCAGGGCa----ACGaG- -5'
31120 5' -59 NC_006560.1 + 62880 0.66 0.783311
Target:  5'- -uUGGGGCG-CAGCGUCUCGccgucgcgcgugaccUUGCUg -3'
miRNA:   3'- gcGCCUCGCaGUCGCAGGGC---------------AACGAg -5'
31120 5' -59 NC_006560.1 + 39957 0.66 0.77969
Target:  5'- gGCGGGGCGgCGGCGcgggcggCUgCGUgUGCUCg -3'
miRNA:   3'- gCGCCUCGCaGUCGCa------GG-GCA-ACGAG- -5'
31120 5' -59 NC_006560.1 + 118477 0.66 0.770548
Target:  5'- cCGgGGAGCG--AGCG-CCCGc-GCUCg -3'
miRNA:   3'- -GCgCCUCGCagUCGCaGGGCaaCGAG- -5'
31120 5' -59 NC_006560.1 + 80917 0.66 0.761288
Target:  5'- aCGCGGGGCG-CAGCcaGUCgCCGggcGcCUCc -3'
miRNA:   3'- -GCGCCUCGCaGUCG--CAG-GGCaa-C-GAG- -5'
31120 5' -59 NC_006560.1 + 3052 0.66 0.761288
Target:  5'- nCGCGGAGCGgcccgagggcgCGGcCGgagCCCG--GCUCg -3'
miRNA:   3'- -GCGCCUCGCa----------GUC-GCa--GGGCaaCGAG- -5'
31120 5' -59 NC_006560.1 + 34675 0.66 0.761288
Target:  5'- uCGCGGGGaggaaccuaccUGUCccgccgGGCGUCUCGgugGCUCu -3'
miRNA:   3'- -GCGCCUC-----------GCAG------UCGCAGGGCaa-CGAG- -5'
31120 5' -59 NC_006560.1 + 140357 0.67 0.751918
Target:  5'- cCGCGG-GCGUCGGCGcggcgcggCCCGagGUcCg -3'
miRNA:   3'- -GCGCCuCGCAGUCGCa-------GGGCaaCGaG- -5'
31120 5' -59 NC_006560.1 + 121872 0.67 0.751918
Target:  5'- cCGCGccGAGguCGaUCGGCGUCCCGgcGCg- -3'
miRNA:   3'- -GCGC--CUC--GC-AGUCGCAGGGCaaCGag -5'
31120 5' -59 NC_006560.1 + 4883 0.67 0.751918
Target:  5'- gGCGGcGGCGcCGGCGggggCCgCGUcgcGCUCg -3'
miRNA:   3'- gCGCC-UCGCaGUCGCa---GG-GCAa--CGAG- -5'
31120 5' -59 NC_006560.1 + 12355 0.67 0.743398
Target:  5'- gGCGGGGCG--GGCGUCUCGacgggggggagaggGCUCc -3'
miRNA:   3'- gCGCCUCGCagUCGCAGGGCaa------------CGAG- -5'
31120 5' -59 NC_006560.1 + 6128 0.67 0.732883
Target:  5'- cCGCGccuGCG-CGGCGUCCCcgGUUGCc- -3'
miRNA:   3'- -GCGCcu-CGCaGUCGCAGGG--CAACGag -5'
31120 5' -59 NC_006560.1 + 85539 0.67 0.727104
Target:  5'- gGgGGGGCGggGGCG-CCCGUggggggcgggggcgGCUCg -3'
miRNA:   3'- gCgCCUCGCagUCGCaGGGCAa-------------CGAG- -5'
31120 5' -59 NC_006560.1 + 36922 0.67 0.723236
Target:  5'- gCGcCGGAGCGUCuggcggcgcuGCGUCCCcggGaCUCc -3'
miRNA:   3'- -GC-GCCUCGCAGu---------CGCAGGGcaaC-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.