miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31120 5' -59 NC_006560.1 + 10429 1.1 0.001414
Target:  5'- uCGCGGAGCGUCAGCGUCCCGUUGCUCa -3'
miRNA:   3'- -GCGCCUCGCAGUCGCAGGGCAACGAG- -5'
31120 5' -59 NC_006560.1 + 39622 0.78 0.191627
Target:  5'- cCGCGGcgGGCGUCGGCGUCCgGgcGCg- -3'
miRNA:   3'- -GCGCC--UCGCAGUCGCAGGgCaaCGag -5'
31120 5' -59 NC_006560.1 + 4018 0.75 0.300215
Target:  5'- gGCcgGGGGCGgcggCGGCGUCCCGggGCg- -3'
miRNA:   3'- gCG--CCUCGCa---GUCGCAGGGCaaCGag -5'
31120 5' -59 NC_006560.1 + 31613 0.72 0.459678
Target:  5'- aCGCGGAGcCG-CAGUGggCCCGccGCUCc -3'
miRNA:   3'- -GCGCCUC-GCaGUCGCa-GGGCaaCGAG- -5'
31120 5' -59 NC_006560.1 + 138175 0.71 0.487277
Target:  5'- aGCGGGacgcGCGcCAucGCGUCCCGggGCUg -3'
miRNA:   3'- gCGCCU----CGCaGU--CGCAGGGCaaCGAg -5'
31120 5' -59 NC_006560.1 + 3897 0.71 0.495709
Target:  5'- gGCGGcgucggcGGCGUCGGCGUCCCccucCUCc -3'
miRNA:   3'- gCGCC-------UCGCAGUCGCAGGGcaacGAG- -5'
31120 5' -59 NC_006560.1 + 146853 0.71 0.49665
Target:  5'- gCGCGGGGCGgggCGGCG-CCCGgcccaGCg- -3'
miRNA:   3'- -GCGCCUCGCa--GUCGCaGGGCaa---CGag -5'
31120 5' -59 NC_006560.1 + 57141 0.71 0.49665
Target:  5'- cCGCGGGGCGUCGGCGccgaCCCac-GCg- -3'
miRNA:   3'- -GCGCCUCGCAGUCGCa---GGGcaaCGag -5'
31120 5' -59 NC_006560.1 + 108031 0.71 0.506104
Target:  5'- aCGCGGAgcaccgucucgGCGUCGGCGcgCgCGUcGCUCc -3'
miRNA:   3'- -GCGCCU-----------CGCAGUCGCa-GgGCAaCGAG- -5'
31120 5' -59 NC_006560.1 + 2117 0.7 0.534903
Target:  5'- aGCGGcgcGGCGUCGGgGUCCg---GCUCg -3'
miRNA:   3'- gCGCC---UCGCAGUCgCAGGgcaaCGAG- -5'
31120 5' -59 NC_006560.1 + 55434 0.7 0.544633
Target:  5'- gGCGGAGCGcaGGCGggcgagCCCGggGCg- -3'
miRNA:   3'- gCGCCUCGCagUCGCa-----GGGCaaCGag -5'
31120 5' -59 NC_006560.1 + 3478 0.7 0.55442
Target:  5'- gCGCGGgcGGCGUCGGCGUCggCGUcgGCg- -3'
miRNA:   3'- -GCGCC--UCGCAGUCGCAGg-GCAa-CGag -5'
31120 5' -59 NC_006560.1 + 58375 0.7 0.559333
Target:  5'- cCGCGGGgggagcggcgcccGCGUCGGCGccCCCGggggccgcgucggUGCUCc -3'
miRNA:   3'- -GCGCCU-------------CGCAGUCGCa-GGGCa------------ACGAG- -5'
31120 5' -59 NC_006560.1 + 146293 0.7 0.564258
Target:  5'- cCGCGGGGgcgcgGUCGGCGUCCaCGUggugGgUCu -3'
miRNA:   3'- -GCGCCUCg----CAGUCGCAGG-GCAa---CgAG- -5'
31120 5' -59 NC_006560.1 + 26366 0.7 0.584065
Target:  5'- gGCGGGGCGgagaCGGCGcCCCGgccgggGCg- -3'
miRNA:   3'- gCGCCUCGCa---GUCGCaGGGCaa----CGag -5'
31120 5' -59 NC_006560.1 + 3338 0.69 0.594022
Target:  5'- gGCGGgcGGCGUCGGCGUCggCGUcgGCgUCg -3'
miRNA:   3'- gCGCC--UCGCAGUCGCAGg-GCAa-CG-AG- -5'
31120 5' -59 NC_006560.1 + 127500 0.69 0.614008
Target:  5'- cCGCGG-GCG-CGGCGgaggCCC--UGCUCg -3'
miRNA:   3'- -GCGCCuCGCaGUCGCa---GGGcaACGAG- -5'
31120 5' -59 NC_006560.1 + 21043 0.69 0.624024
Target:  5'- gGCGGGGCGcccgcgCGGCGUCCCc--GgUCg -3'
miRNA:   3'- gCGCCUCGCa-----GUCGCAGGGcaaCgAG- -5'
31120 5' -59 NC_006560.1 + 117318 0.68 0.644067
Target:  5'- gCGCGGAGgGUgAGCGgucgggCCCGccGCg- -3'
miRNA:   3'- -GCGCCUCgCAgUCGCa-----GGGCaaCGag -5'
31120 5' -59 NC_006560.1 + 55327 0.68 0.644067
Target:  5'- uCGCGGGGCGggggcucgUGGCGg-CCGUggUGCUCc -3'
miRNA:   3'- -GCGCCUCGCa-------GUCGCagGGCA--ACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.