miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31121 3' -53.6 NC_006560.1 + 108573 0.69 0.869827
Target:  5'- cACcUGCACGAaCUcGCUCAcGGUCgUGCg -3'
miRNA:   3'- -UGuACGUGCUaGA-CGAGUaCCGG-ACG- -5'
31121 3' -53.6 NC_006560.1 + 105852 0.69 0.866766
Target:  5'- uCGUGCGCGcgCgcuacgggcugcgGUUCAUGGgCCUGUc -3'
miRNA:   3'- uGUACGUGCuaGa------------CGAGUACC-GGACG- -5'
31121 3' -53.6 NC_006560.1 + 51524 0.69 0.837662
Target:  5'- cGCGgcgGCGCGcgC-GCUCcUGGCCgGCg -3'
miRNA:   3'- -UGUa--CGUGCuaGaCGAGuACCGGaCG- -5'
31121 3' -53.6 NC_006560.1 + 13182 0.7 0.808721
Target:  5'- cGCGUGCAUGAggaaccccaggucgUCcucGCUCGUGGCgCUGa -3'
miRNA:   3'- -UGUACGUGCU--------------AGa--CGAGUACCG-GACg -5'
31121 3' -53.6 NC_006560.1 + 128059 0.71 0.77409
Target:  5'- cGCGUugACGcgCUGCUgAUGcGCCUGCu -3'
miRNA:   3'- -UGUAcgUGCuaGACGAgUAC-CGGACG- -5'
31121 3' -53.6 NC_006560.1 + 48769 0.71 0.754573
Target:  5'- -gAUGCGCcagGAcCUGUUCGagGGCCUGCg -3'
miRNA:   3'- ugUACGUG---CUaGACGAGUa-CCGGACG- -5'
31121 3' -53.6 NC_006560.1 + 137526 0.72 0.683182
Target:  5'- cCAUGCGCGGcggGCUCAuguccgUGGCgCUGCa -3'
miRNA:   3'- uGUACGUGCUagaCGAGU------ACCG-GACG- -5'
31121 3' -53.6 NC_006560.1 + 94282 0.73 0.651717
Target:  5'- cCGUGCGCGGUCUGCuUCGaGGagCUGUg -3'
miRNA:   3'- uGUACGUGCUAGACG-AGUaCCg-GACG- -5'
31121 3' -53.6 NC_006560.1 + 4136 0.77 0.438877
Target:  5'- ---cGCGCGGUCguagcggcgGCUCAUGGCCacgGCg -3'
miRNA:   3'- uguaCGUGCUAGa--------CGAGUACCGGa--CG- -5'
31121 3' -53.6 NC_006560.1 + 23677 0.78 0.385248
Target:  5'- -gGUGCGCGAcgcgCUgacGCUCAUGcGCCUGCg -3'
miRNA:   3'- ugUACGUGCUa---GA---CGAGUAC-CGGACG- -5'
31121 3' -53.6 NC_006560.1 + 7980 1 0.017363
Target:  5'- cACAU-CACGAUCUGCUCAUGGCCUGCg -3'
miRNA:   3'- -UGUAcGUGCUAGACGAGUACCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.