miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31121 5' -63 NC_006560.1 + 25328 0.66 0.566917
Target:  5'- cGUGCgcuggGCCgccGGC-CGCGCCGaCACGc -3'
miRNA:   3'- -CACGa----CGGa--CCGcGUGCGGCgGUGCa -5'
31121 5' -63 NC_006560.1 + 117520 0.66 0.566917
Target:  5'- -cGcCUGCCUGGC-CGCcuccgggguGCCGCUACa- -3'
miRNA:   3'- caC-GACGGACCGcGUG---------CGGCGGUGca -5'
31121 5' -63 NC_006560.1 + 54635 0.66 0.566917
Target:  5'- -aGCUGCUUGGCG-ACGgCG-CGCGg -3'
miRNA:   3'- caCGACGGACCGCgUGCgGCgGUGCa -5'
31121 5' -63 NC_006560.1 + 74436 0.66 0.55718
Target:  5'- -cGCgggaccGCCUcGGCGCGCGCgCGCgCGCc- -3'
miRNA:   3'- caCGa-----CGGA-CCGCGUGCG-GCG-GUGca -5'
31121 5' -63 NC_006560.1 + 99714 0.66 0.55718
Target:  5'- -cGCcGCCcgggugggggGGCGCguACGCCGCCGgGg -3'
miRNA:   3'- caCGaCGGa---------CCGCG--UGCGGCGGUgCa -5'
31121 5' -63 NC_006560.1 + 16321 0.66 0.55718
Target:  5'- -cGCgcccGCgaGGCGCaggcacagcaGCGCCGCCAgGa -3'
miRNA:   3'- caCGa---CGgaCCGCG----------UGCGGCGGUgCa -5'
31121 5' -63 NC_006560.1 + 128069 0.66 0.55718
Target:  5'- -cGCUGCUgauGCGCcUGCUGCgCGCGUg -3'
miRNA:   3'- caCGACGGac-CGCGuGCGGCG-GUGCA- -5'
31121 5' -63 NC_006560.1 + 63592 0.66 0.55718
Target:  5'- -gGCUGCCgguggUGGC-CGCGgCGCgCACGa -3'
miRNA:   3'- caCGACGG-----ACCGcGUGCgGCG-GUGCa -5'
31121 5' -63 NC_006560.1 + 74095 0.66 0.556209
Target:  5'- -gGCgGCCUGGCugGCGuCGCugggcgaCGCCGCGg -3'
miRNA:   3'- caCGaCGGACCG--CGU-GCG-------GCGGUGCa -5'
31121 5' -63 NC_006560.1 + 68303 0.66 0.547492
Target:  5'- -gGcCUG-CUGGCGCACcgccugGCCGUCGCGc -3'
miRNA:   3'- caC-GACgGACCGCGUG------CGGCGGUGCa -5'
31121 5' -63 NC_006560.1 + 3979 0.66 0.547492
Target:  5'- -cGCUGCgC-GGCGaCACGCCcGCgGCGc -3'
miRNA:   3'- caCGACG-GaCCGC-GUGCGG-CGgUGCa -5'
31121 5' -63 NC_006560.1 + 130368 0.66 0.547492
Target:  5'- -cGCUcaacgacccgGCCcugUGGCGCGCGCUGUaCGCGa -3'
miRNA:   3'- caCGA----------CGG---ACCGCGUGCGGCG-GUGCa -5'
31121 5' -63 NC_006560.1 + 78146 0.66 0.547492
Target:  5'- uGUGcCUGCC-GaGCGcCGCGCuCGCCGCu- -3'
miRNA:   3'- -CAC-GACGGaC-CGC-GUGCG-GCGGUGca -5'
31121 5' -63 NC_006560.1 + 47730 0.66 0.547492
Target:  5'- -cGCUucgggGCCccGGCccGCgGCGCCGCCGCGa -3'
miRNA:   3'- caCGA-----CGGa-CCG--CG-UGCGGCGGUGCa -5'
31121 5' -63 NC_006560.1 + 16634 0.66 0.546527
Target:  5'- gGUGUacGCCgGGCggcgguuGCGCGCCGCC-CGg -3'
miRNA:   3'- -CACGa-CGGaCCG-------CGUGCGGCGGuGCa -5'
31121 5' -63 NC_006560.1 + 25163 0.66 0.537858
Target:  5'- -cGuCUaCCUGGCGCuggaccGCGCgGCCGCGc -3'
miRNA:   3'- caC-GAcGGACCGCG------UGCGgCGGUGCa -5'
31121 5' -63 NC_006560.1 + 85421 0.66 0.537858
Target:  5'- gGUGUUGa--GGgGCACGCCgugcGCCACGg -3'
miRNA:   3'- -CACGACggaCCgCGUGCGG----CGGUGCa -5'
31121 5' -63 NC_006560.1 + 70798 0.66 0.537858
Target:  5'- -cGCcgGCC-GGCaGCACGCCcgaccagcgcGCCGCGg -3'
miRNA:   3'- caCGa-CGGaCCG-CGUGCGG----------CGGUGCa -5'
31121 5' -63 NC_006560.1 + 75414 0.66 0.537858
Target:  5'- -cGCgGCCcGGCGCGC-CCGCgACa- -3'
miRNA:   3'- caCGaCGGaCCGCGUGcGGCGgUGca -5'
31121 5' -63 NC_006560.1 + 84882 0.66 0.537858
Target:  5'- cGUGCacaccauCCUGcGCGC-CGCCGCCgGCGa -3'
miRNA:   3'- -CACGac-----GGAC-CGCGuGCGGCGG-UGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.