miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31122 3' -58.1 NC_006560.1 + 32438 0.66 0.850025
Target:  5'- -cCGggGGGCCggggCUCCCCCacggGGCcggGGGCu -3'
miRNA:   3'- gaGCuuUUUGGa---GGGGGGG----CCG---CCUG- -5'
31122 3' -58.1 NC_006560.1 + 9291 0.66 0.850025
Target:  5'- cCUCGggGGaccacggguccGCCUUCgUCCCGGagaGGAUc -3'
miRNA:   3'- -GAGCuuUU-----------UGGAGGgGGGGCCg--CCUG- -5'
31122 3' -58.1 NC_006560.1 + 45787 0.66 0.850025
Target:  5'- gCUCGGuccgccGGGGCCUUUuggCCCCCggGGCGGAg -3'
miRNA:   3'- -GAGCU------UUUUGGAGG---GGGGG--CCGCCUg -5'
31122 3' -58.1 NC_006560.1 + 99141 0.66 0.842157
Target:  5'- uCUCGggGucGCCggCCUCgCCGG-GGGCg -3'
miRNA:   3'- -GAGCuuUu-UGGa-GGGGgGGCCgCCUG- -5'
31122 3' -58.1 NC_006560.1 + 148238 0.66 0.842157
Target:  5'- --------cCCUCCCCCUCGacggcggcuGCGGACg -3'
miRNA:   3'- gagcuuuuuGGAGGGGGGGC---------CGCCUG- -5'
31122 3' -58.1 NC_006560.1 + 105589 0.66 0.83976
Target:  5'- cCUCGGggggcgccgccccgGAGGCCg-CCCCCCGGCccccGGCc -3'
miRNA:   3'- -GAGCU--------------UUUUGGagGGGGGGCCGc---CUG- -5'
31122 3' -58.1 NC_006560.1 + 111985 0.66 0.834105
Target:  5'- -gCGggGGACCUggUCCCCgCGcCGGGCc -3'
miRNA:   3'- gaGCuuUUUGGA--GGGGGgGCcGCCUG- -5'
31122 3' -58.1 NC_006560.1 + 81769 0.66 0.834105
Target:  5'- gCUCGGccguGAUCgUgCCCCCCGGCgcccccgcgGGGCg -3'
miRNA:   3'- -GAGCUuu--UUGG-AgGGGGGGCCG---------CCUG- -5'
31122 3' -58.1 NC_006560.1 + 32239 0.66 0.834105
Target:  5'- --gGGcgGAgC-CCCCCCCGG-GGACa -3'
miRNA:   3'- gagCUuuUUgGaGGGGGGGCCgCCUG- -5'
31122 3' -58.1 NC_006560.1 + 133115 0.66 0.834105
Target:  5'- -aCGAcggcGAAGgCgaaCCCCCGGUGGGCg -3'
miRNA:   3'- gaGCU----UUUUgGaggGGGGGCCGCCUG- -5'
31122 3' -58.1 NC_006560.1 + 88797 0.66 0.834105
Target:  5'- -cCGAAGAACCcggCCgCCgCCCGcgcGCGGAUc -3'
miRNA:   3'- gaGCUUUUUGGa--GG-GG-GGGC---CGCCUG- -5'
31122 3' -58.1 NC_006560.1 + 71079 0.66 0.834105
Target:  5'- cCUCGGcgcuccGGCC-CUUCCCCGGCccGGACc -3'
miRNA:   3'- -GAGCUuu----UUGGaGGGGGGGCCG--CCUG- -5'
31122 3' -58.1 NC_006560.1 + 2662 0.66 0.834105
Target:  5'- gUCGGcgGGCCaCUCCUCgGGCGGcACg -3'
miRNA:   3'- gAGCUuuUUGGaGGGGGGgCCGCC-UG- -5'
31122 3' -58.1 NC_006560.1 + 128309 0.66 0.834105
Target:  5'- -cCGcgGGGCgUCCCCCCgGGgccgGGACg -3'
miRNA:   3'- gaGCuuUUUGgAGGGGGGgCCg---CCUG- -5'
31122 3' -58.1 NC_006560.1 + 1079 0.66 0.834105
Target:  5'- -aCGGggcaGAAGCCgCCCgccaggcuCCCCGGCGGcGCg -3'
miRNA:   3'- gaGCU----UUUUGGaGGG--------GGGGCCGCC-UG- -5'
31122 3' -58.1 NC_006560.1 + 46999 0.66 0.834105
Target:  5'- uUCGAGGAGCCcgcgggCCgCgCCCG-CGGGCg -3'
miRNA:   3'- gAGCUUUUUGGa-----GGgG-GGGCcGCCUG- -5'
31122 3' -58.1 NC_006560.1 + 126283 0.66 0.834105
Target:  5'- cCUCGucguAGAUgggCUCCCCCUCGGUGuACu -3'
miRNA:   3'- -GAGCuu--UUUG---GAGGGGGGGCCGCcUG- -5'
31122 3' -58.1 NC_006560.1 + 149366 0.66 0.834105
Target:  5'- --gGAGGAGCCgggcggcgcCgCCCCCCGaGCGGGg -3'
miRNA:   3'- gagCUUUUUGGa--------G-GGGGGGC-CGCCUg -5'
31122 3' -58.1 NC_006560.1 + 50316 0.66 0.834105
Target:  5'- gUCGGAGAuCCUggCCgCCCUcGCGGGCu -3'
miRNA:   3'- gAGCUUUUuGGA--GGgGGGGcCGCCUG- -5'
31122 3' -58.1 NC_006560.1 + 15100 0.66 0.834105
Target:  5'- cCUCGggGGucGCCUCUgCgaCCCGGgGGGu -3'
miRNA:   3'- -GAGCuuUU--UGGAGGgG--GGGCCgCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.