miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31122 3' -58.1 NC_006560.1 + 439 0.74 0.400232
Target:  5'- cCUCcgc-GGCCUCCgcggccUCCCCGGCGGGCg -3'
miRNA:   3'- -GAGcuuuUUGGAGG------GGGGGCCGCCUG- -5'
31122 3' -58.1 NC_006560.1 + 690 0.68 0.73555
Target:  5'- gCUCGucgcGGGCCccgUCCCCCCCcGCGGcCc -3'
miRNA:   3'- -GAGCuu--UUUGG---AGGGGGGGcCGCCuG- -5'
31122 3' -58.1 NC_006560.1 + 1079 0.66 0.834105
Target:  5'- -aCGGggcaGAAGCCgCCCgccaggcuCCCCGGCGGcGCg -3'
miRNA:   3'- gaGCU----UUUUGGaGGG--------GGGGCCGCC-UG- -5'
31122 3' -58.1 NC_006560.1 + 2662 0.66 0.834105
Target:  5'- gUCGGcgGGCCaCUCCUCgGGCGGcACg -3'
miRNA:   3'- gAGCUuuUUGGaGGGGGGgCCGCC-UG- -5'
31122 3' -58.1 NC_006560.1 + 5533 0.68 0.725898
Target:  5'- gUCGcgcucuuCCgUCCCCCCGGcCGGACc -3'
miRNA:   3'- gAGCuuuuu--GGaGGGGGGGCC-GCCUG- -5'
31122 3' -58.1 NC_006560.1 + 7383 0.68 0.745115
Target:  5'- uUCGAGAgccccGACCUCcucgagagCCCCgCCGGCcccgGGACc -3'
miRNA:   3'- gAGCUUU-----UUGGAG--------GGGG-GGCCG----CCUG- -5'
31122 3' -58.1 NC_006560.1 + 7814 1.1 0.001739
Target:  5'- gCUCGAAAAACCUCCCCCCCGGCGGACg -3'
miRNA:   3'- -GAGCUUUUUGGAGGGGGGGCCGCCUG- -5'
31122 3' -58.1 NC_006560.1 + 7899 0.67 0.76395
Target:  5'- --aGAGAcGCCgCCaucuggCCCUGGCGGACg -3'
miRNA:   3'- gagCUUUuUGGaGGg-----GGGGCCGCCUG- -5'
31122 3' -58.1 NC_006560.1 + 9291 0.66 0.850025
Target:  5'- cCUCGggGGaccacggguccGCCUUCgUCCCGGagaGGAUc -3'
miRNA:   3'- -GAGCuuUU-----------UGGAGGgGGGGCCg--CCUG- -5'
31122 3' -58.1 NC_006560.1 + 12395 0.67 0.76395
Target:  5'- uCUCGuuccAGACCaCCCCCCgCGcGCGGcCg -3'
miRNA:   3'- -GAGCuu--UUUGGaGGGGGG-GC-CGCCuG- -5'
31122 3' -58.1 NC_006560.1 + 13100 0.72 0.511956
Target:  5'- gCUCGAAGAugaacugcgugACCUCCaCCCagucguugaccuuuaCCaGGCGGACg -3'
miRNA:   3'- -GAGCUUUU-----------UGGAGG-GGG---------------GG-CCGCCUG- -5'
31122 3' -58.1 NC_006560.1 + 14535 0.69 0.676643
Target:  5'- cCUCccccgcGCCUCCCUCCCGGgaggGGGCg -3'
miRNA:   3'- -GAGcuuuu-UGGAGGGGGGGCCg---CCUG- -5'
31122 3' -58.1 NC_006560.1 + 15100 0.66 0.834105
Target:  5'- cCUCGggGGucGCCUCUgCgaCCCGGgGGGu -3'
miRNA:   3'- -GAGCuuUU--UGGAGGgG--GGGCCgCCUg -5'
31122 3' -58.1 NC_006560.1 + 15177 0.67 0.791335
Target:  5'- gUCGGGAucacgGGCgUCgcgCCCUCCGGCGGGg -3'
miRNA:   3'- gAGCUUU-----UUGgAG---GGGGGGCCGCCUg -5'
31122 3' -58.1 NC_006560.1 + 16031 0.71 0.566534
Target:  5'- -aCGggGcGCCggcaCCCCCCGGCGucGACc -3'
miRNA:   3'- gaGCuuUuUGGag--GGGGGGCCGC--CUG- -5'
31122 3' -58.1 NC_006560.1 + 17328 0.66 0.825875
Target:  5'- uCUCGAAGAcgcaGCC-CUCCgagCCCGGCgucaGGGCg -3'
miRNA:   3'- -GAGCUUUU----UGGaGGGG---GGGCCG----CCUG- -5'
31122 3' -58.1 NC_006560.1 + 18664 0.69 0.6466
Target:  5'- --aGggGGGCUcguggCCCCuCCCGGaCGGACu -3'
miRNA:   3'- gagCuuUUUGGa----GGGG-GGGCC-GCCUG- -5'
31122 3' -58.1 NC_006560.1 + 19182 0.66 0.834105
Target:  5'- gUCGggGGcacGCCUCCCCaCgCCGcCGGGu -3'
miRNA:   3'- gAGCuuUU---UGGAGGGG-G-GGCcGCCUg -5'
31122 3' -58.1 NC_006560.1 + 20119 0.69 0.69651
Target:  5'- aCUCcgGAAAAACgaCCCCCgCgCGGCGGuCg -3'
miRNA:   3'- -GAG--CUUUUUGgaGGGGG-G-GCCGCCuG- -5'
31122 3' -58.1 NC_006560.1 + 21912 0.68 0.73555
Target:  5'- gCUCGGAGccCCggCgCCCCCgGGCGG-Cg -3'
miRNA:   3'- -GAGCUUUuuGGa-G-GGGGGgCCGCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.