miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31122 5' -55.2 NC_006560.1 + 73831 0.66 0.944326
Target:  5'- aGGAguacuUCCugCGGGGcGCgUGuAcagcgccaaggcgcuGCUGGCCg -3'
miRNA:   3'- -CCU-----AGGugGCCCU-CG-ACuU---------------UGACCGG- -5'
31122 5' -55.2 NC_006560.1 + 11335 0.66 0.942518
Target:  5'- cGGggCgACCGGcGAGggGggGCgguagaugcgGGCCg -3'
miRNA:   3'- -CCuaGgUGGCC-CUCgaCuuUGa---------CCGG- -5'
31122 5' -55.2 NC_006560.1 + 148133 0.66 0.942518
Target:  5'- aGGAgaaaCCGCagGGGAGCggggGGGACgGGUg -3'
miRNA:   3'- -CCUa---GGUGg-CCCUCGa---CUUUGaCCGg -5'
31122 5' -55.2 NC_006560.1 + 94289 0.66 0.942518
Target:  5'- cGGUCUGCuuCGaGGAGCUGugcguGAC-GGCCa -3'
miRNA:   3'- cCUAGGUG--GC-CCUCGACu----UUGaCCGG- -5'
31122 5' -55.2 NC_006560.1 + 32730 0.66 0.942518
Target:  5'- gGGGUCCGUCGGGggGGCgGGGcccggcgcGCcGGCCg -3'
miRNA:   3'- -CCUAGGUGGCCC--UCGaCUU--------UGaCCGG- -5'
31122 5' -55.2 NC_006560.1 + 44345 0.66 0.942518
Target:  5'- gGGGgcgcgCCcCCGGGAGCaauaUGAGA-UGGUCc -3'
miRNA:   3'- -CCUa----GGuGGCCCUCG----ACUUUgACCGG- -5'
31122 5' -55.2 NC_006560.1 + 3659 0.66 0.942518
Target:  5'- cGGcgCCGCCGGGGacGC-GGAGgUcGCCg -3'
miRNA:   3'- -CCuaGGUGGCCCU--CGaCUUUgAcCGG- -5'
31122 5' -55.2 NC_006560.1 + 70637 0.66 0.942061
Target:  5'- gGGGUUCugCuucauGGGGcacuuucuggcgcGCUGGcggcGGCUGGCCg -3'
miRNA:   3'- -CCUAGGugG-----CCCU-------------CGACU----UUGACCGG- -5'
31122 5' -55.2 NC_006560.1 + 32448 0.66 0.942061
Target:  5'- gGGGcUCCcccacgggGCCGGGGGCUGcGGGCUcccccggGGCg -3'
miRNA:   3'- -CCU-AGG--------UGGCCCUCGAC-UUUGA-------CCGg -5'
31122 5' -55.2 NC_006560.1 + 50290 0.66 0.940673
Target:  5'- cGGGggUACCuGGGGGCgguggacgcgucgGAGAucCUGGCCg -3'
miRNA:   3'- -CCUagGUGG-CCCUCGa------------CUUU--GACCGG- -5'
31122 5' -55.2 NC_006560.1 + 35184 0.66 0.937835
Target:  5'- cGGGgccccgCC-CCGGGGGCgccGggGCccgGGCg -3'
miRNA:   3'- -CCUa-----GGuGGCCCUCGa--CuuUGa--CCGg -5'
31122 5' -55.2 NC_006560.1 + 11794 0.66 0.937835
Target:  5'- ---gCCGCCGGGGG--GggGCUcGGUCg -3'
miRNA:   3'- ccuaGGUGGCCCUCgaCuuUGA-CCGG- -5'
31122 5' -55.2 NC_006560.1 + 6763 0.66 0.937835
Target:  5'- cGGGgggACCGGGGGCUcgGggGCUcgggGGCUc -3'
miRNA:   3'- -CCUaggUGGCCCUCGA--CuuUGA----CCGG- -5'
31122 5' -55.2 NC_006560.1 + 114833 0.66 0.937835
Target:  5'- --cUCCGCugCGGGGGCUGgcGCUGuaGCg -3'
miRNA:   3'- ccuAGGUG--GCCCUCGACuuUGAC--CGg -5'
31122 5' -55.2 NC_006560.1 + 21717 0.66 0.937835
Target:  5'- cGcgCC-CCGGG-GC-GGAGCcGGCCg -3'
miRNA:   3'- cCuaGGuGGCCCuCGaCUUUGaCCGG- -5'
31122 5' -55.2 NC_006560.1 + 71184 0.66 0.937835
Target:  5'- cGGAcUCCucCCGGGAGgaGuccGCccGGCCc -3'
miRNA:   3'- -CCU-AGGu-GGCCCUCgaCuu-UGa-CCGG- -5'
31122 5' -55.2 NC_006560.1 + 38999 0.66 0.937354
Target:  5'- aGGAgcccaaCACCGGGgcccaggGGCUGuccggGGCCg -3'
miRNA:   3'- -CCUag----GUGGCCC-------UCGACuuugaCCGG- -5'
31122 5' -55.2 NC_006560.1 + 28829 0.66 0.936384
Target:  5'- aGAUCC-CCGGGGGCcgcccuaugcugauUGAGAUcgaugGGaCCg -3'
miRNA:   3'- cCUAGGuGGCCCUCG--------------ACUUUGa----CC-GG- -5'
31122 5' -55.2 NC_006560.1 + 142518 0.66 0.932915
Target:  5'- cGGcgCCcCCGGG-GC-GggGCcccgGGCCc -3'
miRNA:   3'- -CCuaGGuGGCCCuCGaCuuUGa---CCGG- -5'
31122 5' -55.2 NC_006560.1 + 137084 0.66 0.932915
Target:  5'- --cUCCugCGcccGGGGCUGGAcGC-GGCCa -3'
miRNA:   3'- ccuAGGugGC---CCUCGACUU-UGaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.