miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31122 5' -55.2 NC_006560.1 + 146566 0.66 0.928282
Target:  5'- uGGGUCC-CCGcGAGCcgGAGGCgcccccggcgcccgaGGCCg -3'
miRNA:   3'- -CCUAGGuGGCcCUCGa-CUUUGa--------------CCGG- -5'
31122 5' -55.2 NC_006560.1 + 73831 0.66 0.944326
Target:  5'- aGGAguacuUCCugCGGGGcGCgUGuAcagcgccaaggcgcuGCUGGCCg -3'
miRNA:   3'- -CCU-----AGGugGCCCU-CG-ACuU---------------UGACCGG- -5'
31122 5' -55.2 NC_006560.1 + 9701 0.66 0.932915
Target:  5'- cGGuaccUCGCCGcGGuGCUGAcgacGACgUGGCCc -3'
miRNA:   3'- -CCua--GGUGGC-CCuCGACU----UUG-ACCGG- -5'
31122 5' -55.2 NC_006560.1 + 71380 0.66 0.926161
Target:  5'- cGGGcggGCCGGGGGUcgcauaaacagccgUGggGCgGGCCg -3'
miRNA:   3'- -CCUaggUGGCCCUCG--------------ACuuUGaCCGG- -5'
31122 5' -55.2 NC_006560.1 + 118433 0.66 0.932409
Target:  5'- cGcgCC-CCGGGGGCgagguccUGGGcgacguccugacGCUGGCCc -3'
miRNA:   3'- cCuaGGuGGCCCUCG-------ACUU------------UGACCGG- -5'
31122 5' -55.2 NC_006560.1 + 142518 0.66 0.932915
Target:  5'- cGGcgCCcCCGGG-GC-GggGCcccgGGCCc -3'
miRNA:   3'- -CCuaGGuGGCCCuCGaCuuUGa---CCGG- -5'
31122 5' -55.2 NC_006560.1 + 137084 0.66 0.932915
Target:  5'- --cUCCugCGcccGGGGCUGGAcGC-GGCCa -3'
miRNA:   3'- ccuAGGugGC---CCUCGACUU-UGaCCGG- -5'
31122 5' -55.2 NC_006560.1 + 149138 0.66 0.922358
Target:  5'- uGGcUCCGCCGcGGcGC-GggGC-GGCCc -3'
miRNA:   3'- -CCuAGGUGGC-CCuCGaCuuUGaCCGG- -5'
31122 5' -55.2 NC_006560.1 + 95063 0.66 0.927756
Target:  5'- cGAggCCGgcCCGGaGAGCUGGgcgGACgucgcgGGCCg -3'
miRNA:   3'- cCUa-GGU--GGCC-CUCGACU---UUGa-----CCGG- -5'
31122 5' -55.2 NC_006560.1 + 142357 0.66 0.927756
Target:  5'- cGcgCC-UCGGGGGCcgGggGCggcGGCCu -3'
miRNA:   3'- cCuaGGuGGCCCUCGa-CuuUGa--CCGG- -5'
31122 5' -55.2 NC_006560.1 + 1211 0.66 0.922358
Target:  5'- aGGcUCC-CCGGGGGC-GggGCcccuGCCg -3'
miRNA:   3'- -CCuAGGuGGCCCUCGaCuuUGac--CGG- -5'
31122 5' -55.2 NC_006560.1 + 63809 0.66 0.922358
Target:  5'- cGGcAUCCAgaGGGcGCUGAAuauguugucgcaGCgccgGGCCu -3'
miRNA:   3'- -CC-UAGGUggCCCuCGACUU------------UGa---CCGG- -5'
31122 5' -55.2 NC_006560.1 + 10360 0.66 0.927756
Target:  5'- cGGG-CCGCCGuGGAGUUGGg---GGCg -3'
miRNA:   3'- -CCUaGGUGGC-CCUCGACUuugaCCGg -5'
31122 5' -55.2 NC_006560.1 + 99607 0.66 0.927756
Target:  5'- cGGcgCgGCgGGGGGCg---GCUGGCg -3'
miRNA:   3'- -CCuaGgUGgCCCUCGacuuUGACCGg -5'
31122 5' -55.2 NC_006560.1 + 76923 0.66 0.927756
Target:  5'- ---gCCuCCGGGAGgaGguGgUGGCCc -3'
miRNA:   3'- ccuaGGuGGCCCUCgaCuuUgACCGG- -5'
31122 5' -55.2 NC_006560.1 + 69895 0.66 0.932915
Target:  5'- ---cCCugCGGGuGCUGGccugggcccggGACuuUGGCCu -3'
miRNA:   3'- ccuaGGugGCCCuCGACU-----------UUG--ACCGG- -5'
31122 5' -55.2 NC_006560.1 + 72344 0.66 0.927756
Target:  5'- --cUCCGUCGGGGGUgUGggGCgcGGCCc -3'
miRNA:   3'- ccuAGGUGGCCCUCG-ACuuUGa-CCGG- -5'
31122 5' -55.2 NC_006560.1 + 65040 0.66 0.927756
Target:  5'- cGGAgcgggGCCGGGcGCgGggGCaggGGCCg -3'
miRNA:   3'- -CCUagg--UGGCCCuCGaCuuUGa--CCGG- -5'
31122 5' -55.2 NC_006560.1 + 69700 0.66 0.922358
Target:  5'- ---cCCGCCGGGcAGC-----CUGGCCa -3'
miRNA:   3'- ccuaGGUGGCCC-UCGacuuuGACCGG- -5'
31122 5' -55.2 NC_006560.1 + 68289 0.66 0.927756
Target:  5'- cGGAgaaCCucCCGGGccuGCUGGcgcaccgcCUGGCCg -3'
miRNA:   3'- -CCUa--GGu-GGCCCu--CGACUuu------GACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.