Results 21 - 40 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31122 | 5' | -55.2 | NC_006560.1 | + | 32775 | 0.66 | 0.932915 |
Target: 5'- gGGGUCCGagggCGaGGGGgaGggGggGGCCg -3' miRNA: 3'- -CCUAGGUg---GC-CCUCgaCuuUgaCCGG- -5' |
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31122 | 5' | -55.2 | NC_006560.1 | + | 69895 | 0.66 | 0.932915 |
Target: 5'- ---cCCugCGGGuGCUGGccugggcccggGACuuUGGCCu -3' miRNA: 3'- ccuaGGugGCCCuCGACU-----------UUG--ACCGG- -5' |
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31122 | 5' | -55.2 | NC_006560.1 | + | 142518 | 0.66 | 0.932915 |
Target: 5'- cGGcgCCcCCGGG-GC-GggGCcccgGGCCc -3' miRNA: 3'- -CCuaGGuGGCCCuCGaCuuUGa---CCGG- -5' |
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31122 | 5' | -55.2 | NC_006560.1 | + | 137084 | 0.66 | 0.932915 |
Target: 5'- --cUCCugCGcccGGGGCUGGAcGC-GGCCa -3' miRNA: 3'- ccuAGGugGC---CCUCGACUU-UGaCCGG- -5' |
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31122 | 5' | -55.2 | NC_006560.1 | + | 3438 | 0.66 | 0.932915 |
Target: 5'- gGGcgCC-CgCGGGGGCgaGGAGCUcuugcgcuugcgGGCCg -3' miRNA: 3'- -CCuaGGuG-GCCCUCGa-CUUUGA------------CCGG- -5' |
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31122 | 5' | -55.2 | NC_006560.1 | + | 131431 | 0.66 | 0.932915 |
Target: 5'- cGGG-CCGUCGcGGcGCUGGccCUGGCCg -3' miRNA: 3'- -CCUaGGUGGC-CCuCGACUuuGACCGG- -5' |
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31122 | 5' | -55.2 | NC_006560.1 | + | 118433 | 0.66 | 0.932409 |
Target: 5'- cGcgCC-CCGGGGGCgagguccUGGGcgacguccugacGCUGGCCc -3' miRNA: 3'- cCuaGGuGGCCCUCG-------ACUU------------UGACCGG- -5' |
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31122 | 5' | -55.2 | NC_006560.1 | + | 146566 | 0.66 | 0.928282 |
Target: 5'- uGGGUCC-CCGcGAGCcgGAGGCgcccccggcgcccgaGGCCg -3' miRNA: 3'- -CCUAGGuGGCcCUCGa-CUUUGa--------------CCGG- -5' |
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31122 | 5' | -55.2 | NC_006560.1 | + | 142357 | 0.66 | 0.927756 |
Target: 5'- cGcgCC-UCGGGGGCcgGggGCggcGGCCu -3' miRNA: 3'- cCuaGGuGGCCCUCGa-CuuUGa--CCGG- -5' |
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31122 | 5' | -55.2 | NC_006560.1 | + | 10360 | 0.66 | 0.927756 |
Target: 5'- cGGG-CCGCCGuGGAGUUGGg---GGCg -3' miRNA: 3'- -CCUaGGUGGC-CCUCGACUuugaCCGg -5' |
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31122 | 5' | -55.2 | NC_006560.1 | + | 95063 | 0.66 | 0.927756 |
Target: 5'- cGAggCCGgcCCGGaGAGCUGGgcgGACgucgcgGGCCg -3' miRNA: 3'- cCUa-GGU--GGCC-CUCGACU---UUGa-----CCGG- -5' |
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31122 | 5' | -55.2 | NC_006560.1 | + | 76923 | 0.66 | 0.927756 |
Target: 5'- ---gCCuCCGGGAGgaGguGgUGGCCc -3' miRNA: 3'- ccuaGGuGGCCCUCgaCuuUgACCGG- -5' |
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31122 | 5' | -55.2 | NC_006560.1 | + | 65040 | 0.66 | 0.927756 |
Target: 5'- cGGAgcgggGCCGGGcGCgGggGCaggGGCCg -3' miRNA: 3'- -CCUagg--UGGCCCuCGaCuuUGa--CCGG- -5' |
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31122 | 5' | -55.2 | NC_006560.1 | + | 68289 | 0.66 | 0.927756 |
Target: 5'- cGGAgaaCCucCCGGGccuGCUGGcgcaccgcCUGGCCg -3' miRNA: 3'- -CCUa--GGu-GGCCCu--CGACUuu------GACCGG- -5' |
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31122 | 5' | -55.2 | NC_006560.1 | + | 99607 | 0.66 | 0.927756 |
Target: 5'- cGGcgCgGCgGGGGGCg---GCUGGCg -3' miRNA: 3'- -CCuaGgUGgCCCUCGacuuUGACCGg -5' |
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31122 | 5' | -55.2 | NC_006560.1 | + | 72344 | 0.66 | 0.927756 |
Target: 5'- --cUCCGUCGGGGGUgUGggGCgcGGCCc -3' miRNA: 3'- ccuAGGUGGCCCUCG-ACuuUGa-CCGG- -5' |
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31122 | 5' | -55.2 | NC_006560.1 | + | 71380 | 0.66 | 0.926161 |
Target: 5'- cGGGcggGCCGGGGGUcgcauaaacagccgUGggGCgGGCCg -3' miRNA: 3'- -CCUaggUGGCCCUCG--------------ACuuUGaCCGG- -5' |
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31122 | 5' | -55.2 | NC_006560.1 | + | 149138 | 0.66 | 0.922358 |
Target: 5'- uGGcUCCGCCGcGGcGC-GggGC-GGCCc -3' miRNA: 3'- -CCuAGGUGGC-CCuCGaCuuUGaCCGG- -5' |
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31122 | 5' | -55.2 | NC_006560.1 | + | 1211 | 0.66 | 0.922358 |
Target: 5'- aGGcUCC-CCGGGGGC-GggGCcccuGCCg -3' miRNA: 3'- -CCuAGGuGGCCCUCGaCuuUGac--CGG- -5' |
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31122 | 5' | -55.2 | NC_006560.1 | + | 63809 | 0.66 | 0.922358 |
Target: 5'- cGGcAUCCAgaGGGcGCUGAAuauguugucgcaGCgccgGGCCu -3' miRNA: 3'- -CC-UAGGUggCCCuCGACUU------------UGa---CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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