miRNA display CGI


Results 1 - 20 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31123 3' -67.1 NC_006560.1 + 28877 0.66 0.464922
Target:  5'- aUCGGGGaagCCCGGGCGGUCCCcauGCa-- -3'
miRNA:   3'- gGGCCCUg--GGGUCCGUCGGGG---CGccu -5'
31123 3' -67.1 NC_006560.1 + 125441 0.66 0.464922
Target:  5'- aCCUGGuGACCUucauCGGGCGGCaCCGCa-- -3'
miRNA:   3'- -GGGCC-CUGGG----GUCCGUCGgGGCGccu -5'
31123 3' -67.1 NC_006560.1 + 117093 0.66 0.464922
Target:  5'- gUUGaGGAgCUCGucGGCGGCgCCGCGGAg -3'
miRNA:   3'- gGGC-CCUgGGGU--CCGUCGgGGCGCCU- -5'
31123 3' -67.1 NC_006560.1 + 27875 0.66 0.464922
Target:  5'- gCCgGGGGCCgCgAGGCcGCCuCCGCc-- -3'
miRNA:   3'- -GGgCCCUGG-GgUCCGuCGG-GGCGccu -5'
31123 3' -67.1 NC_006560.1 + 50201 0.66 0.464922
Target:  5'- cCCCGGacgcCCCCGGGCGGCg--GCGGc -3'
miRNA:   3'- -GGGCCcu--GGGGUCCGUCGgggCGCCu -5'
31123 3' -67.1 NC_006560.1 + 145841 0.66 0.464922
Target:  5'- gCCGGGggcGCCCCccucGGCccCCCCGCGc- -3'
miRNA:   3'- gGGCCC---UGGGGu---CCGucGGGGCGCcu -5'
31123 3' -67.1 NC_006560.1 + 22471 0.66 0.464922
Target:  5'- aCCC-GGACCCCGagcgcgacGCGGcCCCCGcCGGc -3'
miRNA:   3'- -GGGcCCUGGGGUc-------CGUC-GGGGC-GCCu -5'
31123 3' -67.1 NC_006560.1 + 81468 0.66 0.464922
Target:  5'- gCCGGGAgagCGGGggggagcgcCGGCCCCGCGGc -3'
miRNA:   3'- gGGCCCUgggGUCC---------GUCGGGGCGCCu -5'
31123 3' -67.1 NC_006560.1 + 5471 0.66 0.464922
Target:  5'- gCCGGGGCUCCgAGcGCGGUCgCgGCGaGGg -3'
miRNA:   3'- gGGCCCUGGGG-UC-CGUCGG-GgCGC-CU- -5'
31123 3' -67.1 NC_006560.1 + 25197 0.66 0.464922
Target:  5'- gCCGGG-CCCgAGGCccuGCCCgcCGCGc- -3'
miRNA:   3'- gGGCCCuGGGgUCCGu--CGGG--GCGCcu -5'
31123 3' -67.1 NC_006560.1 + 26597 0.66 0.464922
Target:  5'- aCCCGaGGCCCagaaAGGacccGCgCCGCGGGg -3'
miRNA:   3'- -GGGCcCUGGGg---UCCgu--CGgGGCGCCU- -5'
31123 3' -67.1 NC_006560.1 + 149820 0.66 0.464922
Target:  5'- --gGGGGgCggAGGCGGCCUCGCGGc -3'
miRNA:   3'- gggCCCUgGggUCCGUCGGGGCGCCu -5'
31123 3' -67.1 NC_006560.1 + 66703 0.66 0.464922
Target:  5'- aCCCGGcGGCCCgGGGgGGCgugCUGcCGGGc -3'
miRNA:   3'- -GGGCC-CUGGGgUCCgUCGg--GGC-GCCU- -5'
31123 3' -67.1 NC_006560.1 + 56886 0.66 0.464922
Target:  5'- aCCCGccGCgCCGGGCccccCCUCGCGGAg -3'
miRNA:   3'- -GGGCccUGgGGUCCGuc--GGGGCGCCU- -5'
31123 3' -67.1 NC_006560.1 + 25135 0.66 0.464922
Target:  5'- gCUGGGGCCUgGGuGC-GCCgCUGCGGc -3'
miRNA:   3'- gGGCCCUGGGgUC-CGuCGG-GGCGCCu -5'
31123 3' -67.1 NC_006560.1 + 148610 0.66 0.459782
Target:  5'- cCCCGagugacgaugggggcGGuCCCCgacGGGCgGGCCCCGCcggccGGAg -3'
miRNA:   3'- -GGGC---------------CCuGGGG---UCCG-UCGGGGCG-----CCU- -5'
31123 3' -67.1 NC_006560.1 + 81272 0.66 0.456372
Target:  5'- --aGGGGCacaCuGGCGGCCCgGCGGc -3'
miRNA:   3'- gggCCCUGgg-GuCCGUCGGGgCGCCu -5'
31123 3' -67.1 NC_006560.1 + 77940 0.66 0.456372
Target:  5'- gCCCGcGGuCCcggCCGGGCcGCCCC-CGGc -3'
miRNA:   3'- -GGGC-CCuGG---GGUCCGuCGGGGcGCCu -5'
31123 3' -67.1 NC_006560.1 + 19656 0.66 0.456372
Target:  5'- gCCGGG-CCCgAGGCGGCugucgucgucgCUgGCGGc -3'
miRNA:   3'- gGGCCCuGGGgUCCGUCG-----------GGgCGCCu -5'
31123 3' -67.1 NC_006560.1 + 52937 0.66 0.456372
Target:  5'- gCCuGGACCCCAcgggccgccGGUgcgcggccccGGCCCgCGCGGc -3'
miRNA:   3'- gGGcCCUGGGGU---------CCG----------UCGGG-GCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.