miRNA display CGI


Results 1 - 20 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31123 3' -67.1 NC_006560.1 + 34996 0.66 0.414949
Target:  5'- cCUCGGGGCCgcgggccggCCGGGC-GCCCCcucCGGu -3'
miRNA:   3'- -GGGCCCUGG---------GGUCCGuCGGGGc--GCCu -5'
31123 3' -67.1 NC_006560.1 + 82773 0.66 0.423049
Target:  5'- gUCGGGGgCCC-GGC-GCCCgcgCGCGGGc -3'
miRNA:   3'- gGGCCCUgGGGuCCGuCGGG---GCGCCU- -5'
31123 3' -67.1 NC_006560.1 + 135559 0.66 0.423049
Target:  5'- gUCCGGGAgcuggcggggcaCCgCCuGG-AGCCCgCGCGGGu -3'
miRNA:   3'- -GGGCCCU------------GG-GGuCCgUCGGG-GCGCCU- -5'
31123 3' -67.1 NC_006560.1 + 81774 0.66 0.414949
Target:  5'- gCCGuGAucgugcCCCCcGGCGcCCCCGCGGGg -3'
miRNA:   3'- gGGCcCU------GGGGuCCGUcGGGGCGCCU- -5'
31123 3' -67.1 NC_006560.1 + 50201 0.66 0.464922
Target:  5'- cCCCGGacgcCCCCGGGCGGCg--GCGGc -3'
miRNA:   3'- -GGGCCcu--GGGGUCCGUCGgggCGCCu -5'
31123 3' -67.1 NC_006560.1 + 56507 0.66 0.423049
Target:  5'- gCCCaGG--CCCAGGCccAGgCCCGCGGc -3'
miRNA:   3'- -GGGcCCugGGGUCCG--UCgGGGCGCCu -5'
31123 3' -67.1 NC_006560.1 + 124609 0.66 0.414949
Target:  5'- gUgGGGGCCCCGGGgGccgugcuucucGCCCCgGUGGc -3'
miRNA:   3'- gGgCCCUGGGGUCCgU-----------CGGGG-CGCCu -5'
31123 3' -67.1 NC_006560.1 + 54237 0.66 0.414949
Target:  5'- gCCCGGGGa---GGGCgcccGGCCCCGCGc- -3'
miRNA:   3'- -GGGCCCUggggUCCG----UCGGGGCGCcu -5'
31123 3' -67.1 NC_006560.1 + 56086 0.66 0.414949
Target:  5'- cCCCGGGGCccgcccccuccgCCCAGcGCAcccgcucgcccGCCCgGuCGGGg -3'
miRNA:   3'- -GGGCCCUG------------GGGUC-CGU-----------CGGGgC-GCCU- -5'
31123 3' -67.1 NC_006560.1 + 981 0.66 0.423049
Target:  5'- gCCCGGGggcgcGCCCCucgccccggccgGGGCGccgucuccGCCCCGCc-- -3'
miRNA:   3'- -GGGCCC-----UGGGG------------UCCGU--------CGGGGCGccu -5'
31123 3' -67.1 NC_006560.1 + 22173 0.66 0.422235
Target:  5'- gCCCGGGcgcuguCCCCgccgucgGGGCcGCCgucgCCGCGGc -3'
miRNA:   3'- -GGGCCCu-----GGGG-------UCCGuCGG----GGCGCCu -5'
31123 3' -67.1 NC_006560.1 + 24656 0.66 0.423049
Target:  5'- uCCUGGGcCUgCuGGCGGCCgCCGcCGGc -3'
miRNA:   3'- -GGGCCCuGGgGuCCGUCGG-GGC-GCCu -5'
31123 3' -67.1 NC_006560.1 + 120894 0.66 0.423049
Target:  5'- aCCCGGGccGCgCCGaacCAGCCCCGCaGGc -3'
miRNA:   3'- -GGGCCC--UGgGGUcc-GUCGGGGCGcCU- -5'
31123 3' -67.1 NC_006560.1 + 31639 0.66 0.414949
Target:  5'- uCCCGccuCCCCgAGGCcGCCCC-CGGGu -3'
miRNA:   3'- -GGGCccuGGGG-UCCGuCGGGGcGCCU- -5'
31123 3' -67.1 NC_006560.1 + 80157 0.66 0.423049
Target:  5'- uCCCGGGGcgggucgagguCCCCcGGCGGgucucgucCCCCGCa-- -3'
miRNA:   3'- -GGGCCCU-----------GGGGuCCGUC--------GGGGCGccu -5'
31123 3' -67.1 NC_006560.1 + 84371 0.66 0.423049
Target:  5'- gCCCGGGACCgCCGcgccucccGGCucgCCCGCGa- -3'
miRNA:   3'- -GGGCCCUGG-GGU--------CCGucgGGGCGCcu -5'
31123 3' -67.1 NC_006560.1 + 138695 0.66 0.414949
Target:  5'- uCCCcc-GCCCCGcGGCGaCCCCGCGGc -3'
miRNA:   3'- -GGGcccUGGGGU-CCGUcGGGGCGCCu -5'
31123 3' -67.1 NC_006560.1 + 38882 0.66 0.414949
Target:  5'- gUCCGGG-CCaCCAcGGCGGCCCgGgCGu- -3'
miRNA:   3'- -GGGCCCuGG-GGU-CCGUCGGGgC-GCcu -5'
31123 3' -67.1 NC_006560.1 + 120192 0.66 0.414949
Target:  5'- gCUGGGcgagcuguGCCCCcccGGCAGCCgCGCGc- -3'
miRNA:   3'- gGGCCC--------UGGGGu--CCGUCGGgGCGCcu -5'
31123 3' -67.1 NC_006560.1 + 114768 0.66 0.414949
Target:  5'- gCgCGGcGACgCCCAGGCccacGGCCCCGa-GAc -3'
miRNA:   3'- -GgGCC-CUG-GGGUCCG----UCGGGGCgcCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.