Results 1 - 20 of 417 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31123 | 3' | -67.1 | NC_006560.1 | + | 7418 | 1.09 | 0.000374 |
Target: 5'- cCCCGGGACCCCAGGCAGCCCCGCGGAc -3' miRNA: 3'- -GGGCCCUGGGGUCCGUCGGGGCGCCU- -5' |
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31123 | 3' | -67.1 | NC_006560.1 | + | 10481 | 0.82 | 0.036429 |
Target: 5'- cCUCGGGGCCCgGGGCgggGGCCCCGuCGGGu -3' miRNA: 3'- -GGGCCCUGGGgUCCG---UCGGGGC-GCCU- -5' |
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31123 | 3' | -67.1 | NC_006560.1 | + | 30681 | 0.8 | 0.04684 |
Target: 5'- uCUCGGGGCCCCccguGGCcccgguGGCCCCGCGGc -3' miRNA: 3'- -GGGCCCUGGGGu---CCG------UCGGGGCGCCu -5' |
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31123 | 3' | -67.1 | NC_006560.1 | + | 140322 | 0.79 | 0.055801 |
Target: 5'- gCCGGGgagucaaaggucACCCCggcGGGaCAGCCCCGCGGGc -3' miRNA: 3'- gGGCCC------------UGGGG---UCC-GUCGGGGCGCCU- -5' |
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31123 | 3' | -67.1 | NC_006560.1 | + | 142721 | 0.78 | 0.066416 |
Target: 5'- cCCCGaGGCgCCCGGGgGGCCCgGCGGAg -3' miRNA: 3'- -GGGCcCUG-GGGUCCgUCGGGgCGCCU- -5' |
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31123 | 3' | -67.1 | NC_006560.1 | + | 134440 | 0.78 | 0.068083 |
Target: 5'- gCCCaGGGCCCggcugacggcgCGGGCGGcCCCCGCGGGc -3' miRNA: 3'- -GGGcCCUGGG-----------GUCCGUC-GGGGCGCCU- -5' |
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31123 | 3' | -67.1 | NC_006560.1 | + | 60806 | 0.78 | 0.071539 |
Target: 5'- aCCGGGucgGCCCCcccgAGG-AGCCCCGCGGGc -3' miRNA: 3'- gGGCCC---UGGGG----UCCgUCGGGGCGCCU- -5' |
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31123 | 3' | -67.1 | NC_006560.1 | + | 142425 | 0.77 | 0.080932 |
Target: 5'- cCCCGGG-CCCCGccgcccggcgcGGCGGCCgCGCGGc -3' miRNA: 3'- -GGGCCCuGGGGU-----------CCGUCGGgGCGCCu -5' |
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31123 | 3' | -67.1 | NC_006560.1 | + | 144982 | 0.77 | 0.082947 |
Target: 5'- cCCCGacGGACCCCGGGCccgcgcGCCCUcggGCGGAg -3' miRNA: 3'- -GGGC--CCUGGGGUCCGu-----CGGGG---CGCCU- -5' |
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31123 | 3' | -67.1 | NC_006560.1 | + | 34954 | 0.77 | 0.087122 |
Target: 5'- cCCCGGGGCCCgGGcGCcgGGCUCCGcCGGGc -3' miRNA: 3'- -GGGCCCUGGGgUC-CG--UCGGGGC-GCCU- -5' |
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31123 | 3' | -67.1 | NC_006560.1 | + | 19565 | 0.76 | 0.091496 |
Target: 5'- cCCCGGaGGCggcaCCGGGCGGCgCCGCGGc -3' miRNA: 3'- -GGGCC-CUGg---GGUCCGUCGgGGCGCCu -5' |
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31123 | 3' | -67.1 | NC_006560.1 | + | 99785 | 0.76 | 0.093761 |
Target: 5'- gCCGGGGCCCCAaacGgGGCCCCGgGGc -3' miRNA: 3'- gGGCCCUGGGGUc--CgUCGGGGCgCCu -5' |
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31123 | 3' | -67.1 | NC_006560.1 | + | 145236 | 0.76 | 0.093761 |
Target: 5'- cCCCGGGggaGCCCgCAGccccCGGCCCCGUGGGg -3' miRNA: 3'- -GGGCCC---UGGG-GUCc---GUCGGGGCGCCU- -5' |
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31123 | 3' | -67.1 | NC_006560.1 | + | 112404 | 0.76 | 0.096079 |
Target: 5'- gCCGGGcCCCCGGGCcccCCCCGcCGGGc -3' miRNA: 3'- gGGCCCuGGGGUCCGuc-GGGGC-GCCU- -5' |
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31123 | 3' | -67.1 | NC_006560.1 | + | 97401 | 0.76 | 0.09845 |
Target: 5'- cCCCGGGgaggcggccACCCCGGGCccCUCCGUGGAc -3' miRNA: 3'- -GGGCCC---------UGGGGUCCGucGGGGCGCCU- -5' |
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31123 | 3' | -67.1 | NC_006560.1 | + | 12168 | 0.76 | 0.106159 |
Target: 5'- cCCCGGGACCuCCAGgucccccaggaaggcGCcguccgccccgacgGGCCCCGCGGc -3' miRNA: 3'- -GGGCCCUGG-GGUC---------------CG--------------UCGGGGCGCCu -5' |
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31123 | 3' | -67.1 | NC_006560.1 | + | 141584 | 0.75 | 0.108238 |
Target: 5'- cCCCGGcggcggcGGCCCCGGugcccgccGCGGCCCCGcCGGGg -3' miRNA: 3'- -GGGCC-------CUGGGGUC--------CGUCGGGGC-GCCU- -5' |
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31123 | 3' | -67.1 | NC_006560.1 | + | 83367 | 0.75 | 0.108501 |
Target: 5'- gCCCGGGGCCCCAgcccucccuGGCcacGGCCCUGauGAa -3' miRNA: 3'- -GGGCCCUGGGGU---------CCG---UCGGGGCgcCU- -5' |
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31123 | 3' | -67.1 | NC_006560.1 | + | 10662 | 0.75 | 0.108501 |
Target: 5'- gCgCGGGGgucCgCCCGGGC-GCCCCGCGGGa -3' miRNA: 3'- -GgGCCCU---G-GGGUCCGuCGGGGCGCCU- -5' |
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31123 | 3' | -67.1 | NC_006560.1 | + | 131362 | 0.75 | 0.110356 |
Target: 5'- cCCCGGGACCCCcuggcgcgggGGGCGcggugcuggcgggcGCUggCCGCGGAc -3' miRNA: 3'- -GGGCCCUGGGG----------UCCGU--------------CGG--GGCGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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