miRNA display CGI


Results 1 - 20 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31123 3' -67.1 NC_006560.1 + 63 0.66 0.439531
Target:  5'- gUuuGGGGCgggUCCGGGCGggcccuccccgcGCCCCGCGc- -3'
miRNA:   3'- -GggCCCUG---GGGUCCGU------------CGGGGCGCcu -5'
31123 3' -67.1 NC_006560.1 + 153 0.7 0.245814
Target:  5'- cCCCGcGG-UCCC-GGCcccGCCCCGCGGu -3'
miRNA:   3'- -GGGC-CCuGGGGuCCGu--CGGGGCGCCu -5'
31123 3' -67.1 NC_006560.1 + 287 0.71 0.205252
Target:  5'- gCCCGcuucGGuCCCCAGGCcgcaacgcgcAGCCCCGUGa- -3'
miRNA:   3'- -GGGC----CCuGGGGUCCG----------UCGGGGCGCcu -5'
31123 3' -67.1 NC_006560.1 + 421 0.68 0.339438
Target:  5'- gCCUguGGGGuuCCCCGGccuccGCGGCCuCCGCGGc -3'
miRNA:   3'- -GGG--CCCU--GGGGUC-----CGUCGG-GGCGCCu -5'
31123 3' -67.1 NC_006560.1 + 547 0.74 0.144694
Target:  5'- cCCCGGGuCCCCGGcgucccccGCGcGCCCCGuCGGu -3'
miRNA:   3'- -GGGCCCuGGGGUC--------CGU-CGGGGC-GCCu -5'
31123 3' -67.1 NC_006560.1 + 645 0.67 0.399037
Target:  5'- uUCCGcacGGCCCCAGGUucgcaccccGGCgcgCCCGCGGc -3'
miRNA:   3'- -GGGCc--CUGGGGUCCG---------UCG---GGGCGCCu -5'
31123 3' -67.1 NC_006560.1 + 712 0.66 0.447907
Target:  5'- cCCCGcGGCCCCGucccccccGCGGCCCCGUc-- -3'
miRNA:   3'- -GGGCcCUGGGGUc-------CGUCGGGGCGccu -5'
31123 3' -67.1 NC_006560.1 + 900 0.69 0.292804
Target:  5'- gCCGGGGCCgCC-GGCcGCuCCCgGCGGu -3'
miRNA:   3'- gGGCCCUGG-GGuCCGuCG-GGG-CGCCu -5'
31123 3' -67.1 NC_006560.1 + 932 0.73 0.166673
Target:  5'- gCCUagGGGAgCCC-GGCAGCCCCGCc-- -3'
miRNA:   3'- -GGG--CCCUgGGGuCCGUCGGGGCGccu -5'
31123 3' -67.1 NC_006560.1 + 981 0.66 0.423049
Target:  5'- gCCCGGGggcgcGCCCCucgccccggccgGGGCGccgucuccGCCCCGCc-- -3'
miRNA:   3'- -GGGCCC-----UGGGG------------UCCGU--------CGGGGCGccu -5'
31123 3' -67.1 NC_006560.1 + 1093 0.66 0.439531
Target:  5'- gCCCGccaGGcuCCCCGgcGGCgcgAGCCCCGCGa- -3'
miRNA:   3'- -GGGC---CCu-GGGGU--CCG---UCGGGGCGCcu -5'
31123 3' -67.1 NC_006560.1 + 1149 0.72 0.19561
Target:  5'- cUCCGGGGuuCCuGGCGGCCggguucuCUGCGGAc -3'
miRNA:   3'- -GGGCCCUggGGuCCGUCGG-------GGCGCCU- -5'
31123 3' -67.1 NC_006560.1 + 1200 0.72 0.19606
Target:  5'- uUCC-GGACCCCAGGCu-CCCCGgGGn -3'
miRNA:   3'- -GGGcCCUGGGGUCCGucGGGGCgCCu -5'
31123 3' -67.1 NC_006560.1 + 1224 0.75 0.119507
Target:  5'- -gCGGGGCCCCuGccgcgcccccacGCAGCCCCgGCGGGg -3'
miRNA:   3'- ggGCCCUGGGGuC------------CGUCGGGG-CGCCU- -5'
31123 3' -67.1 NC_006560.1 + 1303 0.69 0.299148
Target:  5'- gCCCGGGuuccGCCCgCAcGGCucccgAGCCCC-CGGGc -3'
miRNA:   3'- -GGGCCC----UGGG-GU-CCG-----UCGGGGcGCCU- -5'
31123 3' -67.1 NC_006560.1 + 1367 0.66 0.439531
Target:  5'- cCCCGcGGCCCgCAcGGCGccccuccCCCCGCGGc -3'
miRNA:   3'- -GGGCcCUGGG-GU-CCGUc------GGGGCGCCu -5'
31123 3' -67.1 NC_006560.1 + 1523 0.68 0.353715
Target:  5'- aUCGGG-CCCCGGGCGcgcGCCCgGCc-- -3'
miRNA:   3'- gGGCCCuGGGGUCCGU---CGGGgCGccu -5'
31123 3' -67.1 NC_006560.1 + 2413 0.69 0.292804
Target:  5'- gUCGGG-CCCCAGGCGcguGCgCaCGCGGu -3'
miRNA:   3'- gGGCCCuGGGGUCCGU---CGgG-GCGCCu -5'
31123 3' -67.1 NC_006560.1 + 2823 0.67 0.391229
Target:  5'- gCCCGGucCaguugccggCCCAGGCGGCCgUGuCGGGc -3'
miRNA:   3'- -GGGCCcuG---------GGGUCCGUCGGgGC-GCCU- -5'
31123 3' -67.1 NC_006560.1 + 3003 0.67 0.375916
Target:  5'- cUCgGGGACCuggcgcauCCAGGCGGCggCGCGGc -3'
miRNA:   3'- -GGgCCCUGG--------GGUCCGUCGggGCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.