miRNA display CGI


Results 1 - 20 of 417 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31123 3' -67.1 NC_006560.1 + 50201 0.66 0.464922
Target:  5'- cCCCGGacgcCCCCGGGCGGCg--GCGGc -3'
miRNA:   3'- -GGGCCcu--GGGGUCCGUCGgggCGCCu -5'
31123 3' -67.1 NC_006560.1 + 145236 0.76 0.093761
Target:  5'- cCCCGGGggaGCCCgCAGccccCGGCCCCGUGGGg -3'
miRNA:   3'- -GGGCCC---UGGG-GUCc---GUCGGGGCGCCU- -5'
31123 3' -67.1 NC_006560.1 + 112404 0.76 0.096079
Target:  5'- gCCGGGcCCCCGGGCcccCCCCGcCGGGc -3'
miRNA:   3'- gGGCCCuGGGGUCCGuc-GGGGC-GCCU- -5'
31123 3' -67.1 NC_006560.1 + 97401 0.76 0.09845
Target:  5'- cCCCGGGgaggcggccACCCCGGGCccCUCCGUGGAc -3'
miRNA:   3'- -GGGCCC---------UGGGGUCCGucGGGGCGCCU- -5'
31123 3' -67.1 NC_006560.1 + 12168 0.76 0.106159
Target:  5'- cCCCGGGACCuCCAGgucccccaggaaggcGCcguccgccccgacgGGCCCCGCGGc -3'
miRNA:   3'- -GGGCCCUGG-GGUC---------------CG--------------UCGGGGCGCCu -5'
31123 3' -67.1 NC_006560.1 + 141584 0.75 0.108238
Target:  5'- cCCCGGcggcggcGGCCCCGGugcccgccGCGGCCCCGcCGGGg -3'
miRNA:   3'- -GGGCC-------CUGGGGUC--------CGUCGGGGC-GCCU- -5'
31123 3' -67.1 NC_006560.1 + 83367 0.75 0.108501
Target:  5'- gCCCGGGGCCCCAgcccucccuGGCcacGGCCCUGauGAa -3'
miRNA:   3'- -GGGCCCUGGGGU---------CCG---UCGGGGCgcCU- -5'
31123 3' -67.1 NC_006560.1 + 10662 0.75 0.108501
Target:  5'- gCgCGGGGgucCgCCCGGGC-GCCCCGCGGGa -3'
miRNA:   3'- -GgGCCCU---G-GGGUCCGuCGGGGCGCCU- -5'
31123 3' -67.1 NC_006560.1 + 131362 0.75 0.110356
Target:  5'- cCCCGGGACCCCcuggcgcgggGGGCGcggugcuggcgggcGCUggCCGCGGAc -3'
miRNA:   3'- -GGGCCCUGGGG----------UCCGU--------------CGG--GGCGCCU- -5'
31123 3' -67.1 NC_006560.1 + 99785 0.76 0.093761
Target:  5'- gCCGGGGCCCCAaacGgGGCCCCGgGGc -3'
miRNA:   3'- gGGCCCUGGGGUc--CgUCGGGGCgCCu -5'
31123 3' -67.1 NC_006560.1 + 19565 0.76 0.091496
Target:  5'- cCCCGGaGGCggcaCCGGGCGGCgCCGCGGc -3'
miRNA:   3'- -GGGCC-CUGg---GGUCCGUCGgGGCGCCu -5'
31123 3' -67.1 NC_006560.1 + 34954 0.77 0.087122
Target:  5'- cCCCGGGGCCCgGGcGCcgGGCUCCGcCGGGc -3'
miRNA:   3'- -GGGCCCUGGGgUC-CG--UCGGGGC-GCCU- -5'
31123 3' -67.1 NC_006560.1 + 10481 0.82 0.036429
Target:  5'- cCUCGGGGCCCgGGGCgggGGCCCCGuCGGGu -3'
miRNA:   3'- -GGGCCCUGGGgUCCG---UCGGGGC-GCCU- -5'
31123 3' -67.1 NC_006560.1 + 30681 0.8 0.04684
Target:  5'- uCUCGGGGCCCCccguGGCcccgguGGCCCCGCGGc -3'
miRNA:   3'- -GGGCCCUGGGGu---CCG------UCGGGGCGCCu -5'
31123 3' -67.1 NC_006560.1 + 140322 0.79 0.055801
Target:  5'- gCCGGGgagucaaaggucACCCCggcGGGaCAGCCCCGCGGGc -3'
miRNA:   3'- gGGCCC------------UGGGG---UCC-GUCGGGGCGCCU- -5'
31123 3' -67.1 NC_006560.1 + 142721 0.78 0.066416
Target:  5'- cCCCGaGGCgCCCGGGgGGCCCgGCGGAg -3'
miRNA:   3'- -GGGCcCUG-GGGUCCgUCGGGgCGCCU- -5'
31123 3' -67.1 NC_006560.1 + 134440 0.78 0.068083
Target:  5'- gCCCaGGGCCCggcugacggcgCGGGCGGcCCCCGCGGGc -3'
miRNA:   3'- -GGGcCCUGGG-----------GUCCGUC-GGGGCGCCU- -5'
31123 3' -67.1 NC_006560.1 + 60806 0.78 0.071539
Target:  5'- aCCGGGucgGCCCCcccgAGG-AGCCCCGCGGGc -3'
miRNA:   3'- gGGCCC---UGGGG----UCCgUCGGGGCGCCU- -5'
31123 3' -67.1 NC_006560.1 + 142425 0.77 0.080932
Target:  5'- cCCCGGG-CCCCGccgcccggcgcGGCGGCCgCGCGGc -3'
miRNA:   3'- -GGGCCCuGGGGU-----------CCGUCGGgGCGCCu -5'
31123 3' -67.1 NC_006560.1 + 144982 0.77 0.082947
Target:  5'- cCCCGacGGACCCCGGGCccgcgcGCCCUcggGCGGAg -3'
miRNA:   3'- -GGGC--CCUGGGGUCCGu-----CGGGG---CGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.