miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31123 5' -56.3 NC_006560.1 + 27898 0.66 0.922478
Target:  5'- cGCCCCcccuugcgcACGUCGgaccggggguuagGCGUgGCGccucgcGCCCCCg -3'
miRNA:   3'- -UGGGG---------UGCAGCaa-----------UGCA-UGU------CGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 80249 0.66 0.921384
Target:  5'- gACCCCcgccucuccucguggGCGUCGUcccucgcgcuggACGaggagACGGaCCCCCg -3'
miRNA:   3'- -UGGGG---------------UGCAGCAa-----------UGCa----UGUC-GGGGG- -5'
31123 5' -56.3 NC_006560.1 + 40123 0.66 0.920279
Target:  5'- -aCUCGCGUCGUccaucugcaUGCGg--AGCCCCg -3'
miRNA:   3'- ugGGGUGCAGCA---------AUGCaugUCGGGGg -5'
31123 5' -56.3 NC_006560.1 + 88118 0.66 0.920279
Target:  5'- cACCUCgaaguggucgGCGgagaCGUUGCGgaaGgAGCCCCCc -3'
miRNA:   3'- -UGGGG----------UGCa---GCAAUGCa--UgUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 32454 0.66 0.920279
Target:  5'- cCCCCACGgggcCGgggGC-UGCGGgcuCCCCCg -3'
miRNA:   3'- uGGGGUGCa---GCaa-UGcAUGUC---GGGGG- -5'
31123 5' -56.3 NC_006560.1 + 119847 0.66 0.920279
Target:  5'- cCCCCGCG-CccUGCGccu-GCCCCCg -3'
miRNA:   3'- uGGGGUGCaGcaAUGCauguCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 144210 0.66 0.920279
Target:  5'- gGCgCCCGCcUCccUGCcgGCGGCCCCCc -3'
miRNA:   3'- -UG-GGGUGcAGcaAUGcaUGUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 74908 0.66 0.920279
Target:  5'- gGCgCgGcCGUCGcgACGgcCAGCCCCg -3'
miRNA:   3'- -UGgGgU-GCAGCaaUGCauGUCGGGGg -5'
31123 5' -56.3 NC_006560.1 + 22238 0.66 0.919724
Target:  5'- gGCCCCGCGccgcgagUCGgugUGgGUcaucgacgccGC-GCCCCCg -3'
miRNA:   3'- -UGGGGUGC-------AGCa--AUgCA----------UGuCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 120692 0.66 0.919166
Target:  5'- cACCCCGgGcccgaauaaagaCGUUcGCGaGCAGCCCCg -3'
miRNA:   3'- -UGGGGUgCa-----------GCAA-UGCaUGUCGGGGg -5'
31123 5' -56.3 NC_006560.1 + 145341 0.66 0.918606
Target:  5'- cCCCCGUGUCccUGCGgggcccucugcccccCGGCCCCCu -3'
miRNA:   3'- uGGGGUGCAGcaAUGCau-------------GUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 66512 0.66 0.918606
Target:  5'- cGCCCCgguaguuggcggugACGUgCGUccggACGgccucgGCGGCCUCCc -3'
miRNA:   3'- -UGGGG--------------UGCA-GCAa---UGCa-----UGUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 44071 0.66 0.918043
Target:  5'- gGCUCCGC-UCGUaGCGcgccuucucgcucGCGGUCCCCg -3'
miRNA:   3'- -UGGGGUGcAGCAaUGCa------------UGUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 58388 0.66 0.91462
Target:  5'- gGCgCCCGCGUCG------GC-GCCCCCg -3'
miRNA:   3'- -UG-GGGUGCAGCaaugcaUGuCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 7183 0.66 0.91462
Target:  5'- cCCCCGCGg----GCccGCGGCCCCg -3'
miRNA:   3'- uGGGGUGCagcaaUGcaUGUCGGGGg -5'
31123 5' -56.3 NC_006560.1 + 44866 0.66 0.91462
Target:  5'- cUCCCGCccUCGccGCGccccCAGCCCCCg -3'
miRNA:   3'- uGGGGUGc-AGCaaUGCau--GUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 70701 0.66 0.91462
Target:  5'- -gCCCGCGcCGccACG---GGCCCCCg -3'
miRNA:   3'- ugGGGUGCaGCaaUGCaugUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 46614 0.66 0.91462
Target:  5'- gGCCCgACGgcgccuugucUCGggGCGUGuCuuuGCUCCCg -3'
miRNA:   3'- -UGGGgUGC----------AGCaaUGCAU-Gu--CGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 66749 0.66 0.91462
Target:  5'- cGCCCgggugGCGgagggCGaggACG-ACGGCCCCCg -3'
miRNA:   3'- -UGGGg----UGCa----GCaa-UGCaUGUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 134227 0.66 0.91462
Target:  5'- gGCCCCGCc-CGccGCGcgGCccGCCCCCg -3'
miRNA:   3'- -UGGGGUGcaGCaaUGCa-UGu-CGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.