miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31123 5' -56.3 NC_006560.1 + 81492 0.66 0.889682
Target:  5'- gGCCCCGCGgccUCGaccuCGaccuCGGCCCUCu -3'
miRNA:   3'- -UGGGGUGC---AGCaau-GCau--GUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 66912 0.66 0.896256
Target:  5'- uGCUCgGCGcCGc--CGUccgccGCGGCCCCCg -3'
miRNA:   3'- -UGGGgUGCaGCaauGCA-----UGUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 44423 0.66 0.896256
Target:  5'- gGCCCUGacUGUCGUcaacGCGcUGCugcccGCCCCCa -3'
miRNA:   3'- -UGGGGU--GCAGCAa---UGC-AUGu----CGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 27898 0.66 0.922478
Target:  5'- cGCCCCcccuugcgcACGUCGgaccggggguuagGCGUgGCGccucgcGCCCCCg -3'
miRNA:   3'- -UGGGG---------UGCAGCaa-----------UGCA-UGU------CGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 1241 0.66 0.894959
Target:  5'- cCCCCACGcagccccgGCGg--GGCCCCCg -3'
miRNA:   3'- uGGGGUGCagcaa---UGCaugUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 45475 0.66 0.892338
Target:  5'- cGCCCCGCGaguucagcgacgagCGUcccaggACGUAguaGGCCUCCg -3'
miRNA:   3'- -UGGGGUGCa-------------GCAa-----UGCAUg--UCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 7139 0.66 0.889682
Target:  5'- cGCCgCACGUcCGggcacaugGCGUcCGcGCCCCCc -3'
miRNA:   3'- -UGGgGUGCA-GCaa------UGCAuGU-CGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 149796 0.66 0.894959
Target:  5'- aACCCCcgguccgACGUgcgcaagggggggCGgagGCGgccucGCGGCCCCCg -3'
miRNA:   3'- -UGGGG-------UGCA-------------GCaa-UGCa----UGUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 78417 0.66 0.896256
Target:  5'- gGCCCCGguCGUCGUgGCccugcGCAGCgaCCCg -3'
miRNA:   3'- -UGGGGU--GCAGCAaUGca---UGUCGg-GGG- -5'
31123 5' -56.3 NC_006560.1 + 112899 0.66 0.889682
Target:  5'- cACCUgAUGUgGgacgcgGCGcUGCuGCCCCCg -3'
miRNA:   3'- -UGGGgUGCAgCaa----UGC-AUGuCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 50208 0.66 0.889682
Target:  5'- cGCCCCcggGCGgCGgcgGCGcGCGuccGCCCCCc -3'
miRNA:   3'- -UGGGG---UGCaGCaa-UGCaUGU---CGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 26463 0.66 0.889682
Target:  5'- gGCCuCCAcCGcCGggaGCGgccgGCGGCCCCg -3'
miRNA:   3'- -UGG-GGU-GCaGCaa-UGCa---UGUCGGGGg -5'
31123 5' -56.3 NC_006560.1 + 125115 0.66 0.889682
Target:  5'- cGCCCCGgGUCaggUGCc--CGGCCCCg -3'
miRNA:   3'- -UGGGGUgCAGca-AUGcauGUCGGGGg -5'
31123 5' -56.3 NC_006560.1 + 50407 0.66 0.889682
Target:  5'- uACCCgggCGCGgCGgggGCGgAguGCCCCCg -3'
miRNA:   3'- -UGGG---GUGCaGCaa-UGCaUguCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 90827 0.66 0.889012
Target:  5'- cCCCCAgGUCGaccGCG-ACGGCCacgugguCCCg -3'
miRNA:   3'- uGGGGUgCAGCaa-UGCaUGUCGG-------GGG- -5'
31123 5' -56.3 NC_006560.1 + 72341 0.66 0.896256
Target:  5'- cGCCUC-CGUCGgggGUGUggggcGCGGCCCUCg -3'
miRNA:   3'- -UGGGGuGCAGCaa-UGCA-----UGUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 127267 0.66 0.887666
Target:  5'- gACgCCCACGaggcUCGggGCGUccaggugcggggguGCGgccacGCCCCCg -3'
miRNA:   3'- -UG-GGGUGC----AGCaaUGCA--------------UGU-----CGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 146103 0.66 0.889682
Target:  5'- gGCUCCGCGUCGgccag-GCAGCgCgCCa -3'
miRNA:   3'- -UGGGGUGCAGCaaugcaUGUCGgG-GG- -5'
31123 5' -56.3 NC_006560.1 + 27405 0.66 0.896256
Target:  5'- cUCCCGCGgCGgcGCGcGCgcgGGCCUCCg -3'
miRNA:   3'- uGGGGUGCaGCaaUGCaUG---UCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 39177 0.66 0.889682
Target:  5'- cGCCCCcCGUCGgcccccGCGcccCGGUCCCUc -3'
miRNA:   3'- -UGGGGuGCAGCaa----UGCau-GUCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.