miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31123 5' -56.3 NC_006560.1 + 7453 1.11 0.002408
Target:  5'- gACCCCACGUCGUUACGUACAGCCCCCc -3'
miRNA:   3'- -UGGGGUGCAGCAAUGCAUGUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 68961 0.78 0.308668
Target:  5'- cACCCCGCGcUCGgcGCGcGC-GCCCCCc -3'
miRNA:   3'- -UGGGGUGC-AGCaaUGCaUGuCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 79446 0.76 0.376724
Target:  5'- gACCCCGCuccgCGgcGCGUG-AGCCCCCg -3'
miRNA:   3'- -UGGGGUGca--GCaaUGCAUgUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 138072 0.76 0.385706
Target:  5'- cGCCuCCGCGUCcucggcgaccaucGCGUACAGCCUCCa -3'
miRNA:   3'- -UGG-GGUGCAGcaa----------UGCAUGUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 42955 0.76 0.392327
Target:  5'- aGCCCCGCGggggCG-UACGUGCgagcgcgcagguaGGCCUCCg -3'
miRNA:   3'- -UGGGGUGCa---GCaAUGCAUG-------------UCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 113374 0.76 0.393159
Target:  5'- --gCCGCGUCGUcGCGgACGGCCCCg -3'
miRNA:   3'- uggGGUGCAGCAaUGCaUGUCGGGGg -5'
31123 5' -56.3 NC_006560.1 + 848 0.76 0.40155
Target:  5'- gGCCCCGCGcgCGcccGCccACGGCCCCCg -3'
miRNA:   3'- -UGGGGUGCa-GCaa-UGcaUGUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 32535 0.75 0.454193
Target:  5'- cCCCCAgGgaggCGggGaGUGCGGCCCCCc -3'
miRNA:   3'- uGGGGUgCa---GCaaUgCAUGUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 56437 0.75 0.454193
Target:  5'- uGCCCCGCGcCGggGuCGaggagGCGGCCCUCg -3'
miRNA:   3'- -UGGGGUGCaGCaaU-GCa----UGUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 123921 0.75 0.463327
Target:  5'- cGCCCCGCGcUGa-GCGcaaGCGGCCCCCg -3'
miRNA:   3'- -UGGGGUGCaGCaaUGCa--UGUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 78031 0.75 0.463327
Target:  5'- gACCCCcugGCGcCGUgGCGcGCGGCCCCg -3'
miRNA:   3'- -UGGGG---UGCaGCAaUGCaUGUCGGGGg -5'
31123 5' -56.3 NC_006560.1 + 149139 0.75 0.463327
Target:  5'- gGCUCCGcCG-CGgcGCGggGCGGCCCCCa -3'
miRNA:   3'- -UGGGGU-GCaGCaaUGCa-UGUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 68615 0.74 0.472557
Target:  5'- gGCCUCACGaCGcccGCGUACAGCCCg- -3'
miRNA:   3'- -UGGGGUGCaGCaa-UGCAUGUCGGGgg -5'
31123 5' -56.3 NC_006560.1 + 72677 0.74 0.500783
Target:  5'- aGCCCCGCccGUCGaccccgACGc-CGGCCCCCg -3'
miRNA:   3'- -UGGGGUG--CAGCaa----UGCauGUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 113286 0.74 0.510357
Target:  5'- uGCCCCACGgaccCGgugGCGgacACGGCCCaCCc -3'
miRNA:   3'- -UGGGGUGCa---GCaa-UGCa--UGUCGGG-GG- -5'
31123 5' -56.3 NC_006560.1 + 101506 0.74 0.510357
Target:  5'- cCCCCGCGcgaUCGccucggACGgcACGGCCCCCg -3'
miRNA:   3'- uGGGGUGC---AGCaa----UGCa-UGUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 134446 0.74 0.520007
Target:  5'- gGCCCgGCuGaCGgcGCGgGCGGCCCCCg -3'
miRNA:   3'- -UGGGgUG-CaGCaaUGCaUGUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 52942 0.74 0.523887
Target:  5'- gACCCCACGggcCGccggUGCGcggccccggcccgcGCGGCCCCCg -3'
miRNA:   3'- -UGGGGUGCa--GCa---AUGCa-------------UGUCGGGGG- -5'
31123 5' -56.3 NC_006560.1 + 136382 0.73 0.529728
Target:  5'- cACCCUGCGggagUACGUGCGGCUgCCg -3'
miRNA:   3'- -UGGGGUGCagcaAUGCAUGUCGGgGG- -5'
31123 5' -56.3 NC_006560.1 + 50173 0.73 0.549361
Target:  5'- cCCCCGCGccgcCGUcggGCGUccACGGCCCCg -3'
miRNA:   3'- uGGGGUGCa---GCAa--UGCA--UGUCGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.