miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31124 5' -56.3 NC_006560.1 + 83463 0.66 0.914133
Target:  5'- nGAGCUgcugcacgcgcgccgUGGCGCGcaACGCCGaguuugaggcgcGCGAGGGg -3'
miRNA:   3'- -CUCGA---------------GCUGCGUa-UGCGGC------------UGCUCCU- -5'
31124 5' -56.3 NC_006560.1 + 28422 0.66 0.911781
Target:  5'- cGGGC-CGGgGCGg--GCCGAgGGGGAg -3'
miRNA:   3'- -CUCGaGCUgCGUaugCGGCUgCUCCU- -5'
31124 5' -56.3 NC_006560.1 + 106405 0.66 0.911781
Target:  5'- cGAGCUCGAgGC--GCGCCucgGGCGGcuggccgcGGAg -3'
miRNA:   3'- -CUCGAGCUgCGuaUGCGG---CUGCU--------CCU- -5'
31124 5' -56.3 NC_006560.1 + 14326 0.66 0.911781
Target:  5'- cAGCgCGGcCGCccagGCGCCGACGAcGAg -3'
miRNA:   3'- cUCGaGCU-GCGua--UGCGGCUGCUcCU- -5'
31124 5' -56.3 NC_006560.1 + 58262 0.66 0.911781
Target:  5'- cGAGCcgcCGGCcUcgGCGUCGACGGGGu -3'
miRNA:   3'- -CUCGa--GCUGcGuaUGCGGCUGCUCCu -5'
31124 5' -56.3 NC_006560.1 + 4421 0.66 0.911187
Target:  5'- cAGCUCGggcgcccacacggGCGCGggcGCGCCGGCGGc-- -3'
miRNA:   3'- cUCGAGC-------------UGCGUa--UGCGGCUGCUccu -5'
31124 5' -56.3 NC_006560.1 + 85246 0.66 0.905738
Target:  5'- cGGCgcccgCGGCGCGgaaGCCGGCGcugcGGAg -3'
miRNA:   3'- cUCGa----GCUGCGUaugCGGCUGCu---CCU- -5'
31124 5' -56.3 NC_006560.1 + 82777 0.66 0.905738
Target:  5'- gGGGCcCGGCGCccgcGCGCgGGCGcgcGGGAg -3'
miRNA:   3'- -CUCGaGCUGCGua--UGCGgCUGC---UCCU- -5'
31124 5' -56.3 NC_006560.1 + 114360 0.66 0.905738
Target:  5'- gGGGCgCGuACGCGgGCGaCCG-CGAGGGc -3'
miRNA:   3'- -CUCGaGC-UGCGUaUGC-GGCuGCUCCU- -5'
31124 5' -56.3 NC_006560.1 + 109711 0.66 0.905738
Target:  5'- gGAGCgcugcgccCGGCGUAUAUgagcgGCCGgGCGGGGGu -3'
miRNA:   3'- -CUCGa-------GCUGCGUAUG-----CGGC-UGCUCCU- -5'
31124 5' -56.3 NC_006560.1 + 128641 0.66 0.905738
Target:  5'- cGGGUgcgGACGCuc-CGCCG-CGGGGAg -3'
miRNA:   3'- -CUCGag-CUGCGuauGCGGCuGCUCCU- -5'
31124 5' -56.3 NC_006560.1 + 25276 0.66 0.905738
Target:  5'- -cGCUCG-UGCugcGCGCCGACGccGGGc -3'
miRNA:   3'- cuCGAGCuGCGua-UGCGGCUGC--UCCu -5'
31124 5' -56.3 NC_006560.1 + 46085 0.66 0.899464
Target:  5'- cAGCcCGAgGCG-GCGCCGcccGCGGGGGc -3'
miRNA:   3'- cUCGaGCUgCGUaUGCGGC---UGCUCCU- -5'
31124 5' -56.3 NC_006560.1 + 110112 0.66 0.899464
Target:  5'- cAGCUCGugGCGaugGCGauguaCuACGGGGAg -3'
miRNA:   3'- cUCGAGCugCGUa--UGCg----GcUGCUCCU- -5'
31124 5' -56.3 NC_006560.1 + 2679 0.66 0.899464
Target:  5'- cGGGCggcaCGGCGUccACGaCGACGAGGc -3'
miRNA:   3'- -CUCGa---GCUGCGuaUGCgGCUGCUCCu -5'
31124 5' -56.3 NC_006560.1 + 146526 0.66 0.899464
Target:  5'- cGGGC-CGGCGCGUcgggggGCGCgGgcaGCGAGGc -3'
miRNA:   3'- -CUCGaGCUGCGUA------UGCGgC---UGCUCCu -5'
31124 5' -56.3 NC_006560.1 + 16305 0.66 0.89296
Target:  5'- cGGCggGGCGCGggcccGCGCCcGCGAGGc -3'
miRNA:   3'- cUCGagCUGCGUa----UGCGGcUGCUCCu -5'
31124 5' -56.3 NC_006560.1 + 54524 0.66 0.89296
Target:  5'- -uGgUCGAuccCGCcgACGCCGucCGAGGGg -3'
miRNA:   3'- cuCgAGCU---GCGuaUGCGGCu-GCUCCU- -5'
31124 5' -56.3 NC_006560.1 + 83442 0.66 0.89296
Target:  5'- aGGgUCGGCGCG-GCGgCGGCGAGa- -3'
miRNA:   3'- cUCgAGCUGCGUaUGCgGCUGCUCcu -5'
31124 5' -56.3 NC_006560.1 + 119020 0.66 0.89296
Target:  5'- -uGCUgGAgaaCGuCAUGCGCgCGAuCGAGGAg -3'
miRNA:   3'- cuCGAgCU---GC-GUAUGCG-GCU-GCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.