miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31128 3' -50.3 NC_006560.1 + 99298 0.66 0.996307
Target:  5'- -gGGUCggggGAGgugGUggggCGCGGGGGCGu -3'
miRNA:   3'- uaCCAGga--CUUaa-UAa---GUGCCCCUGC- -5'
31128 3' -50.3 NC_006560.1 + 73486 0.66 0.996307
Target:  5'- aGUGGcUCCUGGAgcgcUCGCGGGccGGCc -3'
miRNA:   3'- -UACC-AGGACUUaauaAGUGCCC--CUGc -5'
31128 3' -50.3 NC_006560.1 + 28399 0.66 0.996307
Target:  5'- uUGGUCCgcGggUUGggC-CGGGG-CGg -3'
miRNA:   3'- uACCAGGa-CuuAAUaaGuGCCCCuGC- -5'
31128 3' -50.3 NC_006560.1 + 148391 0.66 0.996307
Target:  5'- -gGGUCCgGGGa-----GCGGGGACGc -3'
miRNA:   3'- uaCCAGGaCUUaauaagUGCCCCUGC- -5'
31128 3' -50.3 NC_006560.1 + 45882 0.66 0.996307
Target:  5'- -aGGUCCacccUGAGc---UCAcCGGGGGCGa -3'
miRNA:   3'- uaCCAGG----ACUUaauaAGU-GCCCCUGC- -5'
31128 3' -50.3 NC_006560.1 + 54655 0.66 0.994934
Target:  5'- -cGGga-UGAGgg--UCGCGGGGGCGc -3'
miRNA:   3'- uaCCaggACUUaauaAGUGCCCCUGC- -5'
31128 3' -50.3 NC_006560.1 + 131955 0.66 0.993172
Target:  5'- cUGGUCCUGGAggccUUCGCGcGGcgccucGACGc -3'
miRNA:   3'- uACCAGGACUUaau-AAGUGC-CC------CUGC- -5'
31128 3' -50.3 NC_006560.1 + 65109 0.66 0.992124
Target:  5'- cAUGGcCCcGGGgcgGgcCGCGGGGGCGg -3'
miRNA:   3'- -UACCaGGaCUUaa-UaaGUGCCCCUGC- -5'
31128 3' -50.3 NC_006560.1 + 55951 0.66 0.992124
Target:  5'- -aGGUCCcguagcggUGGGggUGUUCGgGGGGGCc -3'
miRNA:   3'- uaCCAGG--------ACUUa-AUAAGUgCCCCUGc -5'
31128 3' -50.3 NC_006560.1 + 81064 0.66 0.992124
Target:  5'- gGUGGUCgUGggUgugGUcCACGGGcugcgccucguuGACGg -3'
miRNA:   3'- -UACCAGgACuuAa--UAaGUGCCC------------CUGC- -5'
31128 3' -50.3 NC_006560.1 + 55352 0.67 0.990952
Target:  5'- cGUGGUgCUccag----CACGGGGACGg -3'
miRNA:   3'- -UACCAgGAcuuaauaaGUGCCCCUGC- -5'
31128 3' -50.3 NC_006560.1 + 29405 0.67 0.990952
Target:  5'- -gGGUCCUGGGgguc-CugGGGGucuACGg -3'
miRNA:   3'- uaCCAGGACUUaauaaGugCCCC---UGC- -5'
31128 3' -50.3 NC_006560.1 + 133856 0.67 0.986598
Target:  5'- -aGGUCCUGcGcgUAUga--GGGGACGu -3'
miRNA:   3'- uaCCAGGAC-UuaAUAagugCCCCUGC- -5'
31128 3' -50.3 NC_006560.1 + 140384 0.69 0.963142
Target:  5'- -aGGUCCggucguccccggGGGggGUUCAgcgcCGGGGACGg -3'
miRNA:   3'- uaCCAGGa-----------CUUaaUAAGU----GCCCCUGC- -5'
31128 3' -50.3 NC_006560.1 + 46469 0.7 0.933387
Target:  5'- gGUGGUCCggGGGcUAUUCGCGgcccGGGACc -3'
miRNA:   3'- -UACCAGGa-CUUaAUAAGUGC----CCCUGc -5'
31128 3' -50.3 NC_006560.1 + 15597 0.71 0.903914
Target:  5'- -aGGUCCUGGGgcca-CACGGGGuccaGCGg -3'
miRNA:   3'- uaCCAGGACUUaauaaGUGCCCC----UGC- -5'
31128 3' -50.3 NC_006560.1 + 71310 0.74 0.799214
Target:  5'- cGUGGUCCgcgucgUGUcgcgcccgcUCGCGGGGGCGg -3'
miRNA:   3'- -UACCAGGacuua-AUA---------AGUGCCCCUGC- -5'
31128 3' -50.3 NC_006560.1 + 11685 0.75 0.76053
Target:  5'- -cGGUCCgggcgggcgGGAUcggcgUCGCGGGGACGa -3'
miRNA:   3'- uaCCAGGa--------CUUAaua--AGUGCCCCUGC- -5'
31128 3' -50.3 NC_006560.1 + 135739 0.76 0.719863
Target:  5'- -aGGUCCUGGAcugcguggUgACGGGGGCGa -3'
miRNA:   3'- uaCCAGGACUUaaua----AgUGCCCCUGC- -5'
31128 3' -50.3 NC_006560.1 + 28587 1.07 0.013579
Target:  5'- aAUGGUCCUGAAUUAUUCACGGGGACGc -3'
miRNA:   3'- -UACCAGGACUUAAUAAGUGCCCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.