miRNA display CGI


Results 81 - 100 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31128 5' -51.7 NC_006560.1 + 147619 0.67 0.984269
Target:  5'- gCCGCcuCCCCGggGAgg---CGGUGCGu -3'
miRNA:   3'- gGGCG--GGGGCaaUUaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 82218 0.67 0.984269
Target:  5'- cCCCGCUUCUGcgcGAgcaGUUCGGCGUGc -3'
miRNA:   3'- -GGGCGGGGGCaa-UUaa-UAAGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 30897 0.67 0.984998
Target:  5'- cCCCGCCCCgGgccca-----GGCGCa -3'
miRNA:   3'- -GGGCGGGGgCaauuaauaagUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 114887 0.67 0.980214
Target:  5'- gCCGCUCCCGcauaaaaggcccggCGGCGCGc -3'
miRNA:   3'- gGGCGGGGGCaauuaauaa-----GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 94421 0.67 0.980214
Target:  5'- aCCUGCCCCaCGccgccgGGUUcucggaggCGGCGCGg -3'
miRNA:   3'- -GGGCGGGG-GCaa----UUAAuaa-----GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 14119 0.67 0.974109
Target:  5'- cCCCGCgCCCauggcggccagggUCAGCGCGc -3'
miRNA:   3'- -GGGCGgGGGcaauuaaua----AGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 13793 0.67 0.975427
Target:  5'- aUCGCCCUCGg----UGUUCGGgGCc -3'
miRNA:   3'- gGGCGGGGGCaauuaAUAAGUCgCGc -5'
31128 5' -51.7 NC_006560.1 + 103134 0.67 0.976446
Target:  5'- gCgCGCCCCCGggcgccc-UCuGCGCGu -3'
miRNA:   3'- -GgGCGGGGGCaauuaauaAGuCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 25738 0.67 0.977676
Target:  5'- cCCCGgCCCCGccacagaca-GGCGCGa -3'
miRNA:   3'- -GGGCgGGGGCaauuaauaagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 101928 0.67 0.977916
Target:  5'- gCCGCCCUCGUcgccgAU--GGCGCGc -3'
miRNA:   3'- gGGCGGGGGCAauuaaUAagUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 118547 0.67 0.977916
Target:  5'- aCCGCCCCgGcUGGcUGUggagcCGGCGCu -3'
miRNA:   3'- gGGCGGGGgCaAUUaAUAa----GUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 119796 0.67 0.977916
Target:  5'- gCCCGaCCCCCGgcGGgcgcUGUUCuGCGa- -3'
miRNA:   3'- -GGGC-GGGGGCaaUUa---AUAAGuCGCgc -5'
31128 5' -51.7 NC_006560.1 + 13417 0.67 0.977916
Target:  5'- aCCGCCUCCG--------UCGGCGCc -3'
miRNA:   3'- gGGCGGGGGCaauuaauaAGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 108379 0.67 0.978858
Target:  5'- gCCUGCuCCCCGaacacg---CGGCGCGc -3'
miRNA:   3'- -GGGCG-GGGGCaauuaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 43501 0.67 0.979089
Target:  5'- gUCGCCCCCGcgccccccagccgCAGCGCc -3'
miRNA:   3'- gGGCGGGGGCaauuaauaa----GUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 102918 0.67 0.979544
Target:  5'- cCUCGCCCUCGcgGGggaccggggcggCGGCGCGg -3'
miRNA:   3'- -GGGCGGGGGCaaUUaauaa-------GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 19091 0.67 0.979769
Target:  5'- cCCCGCCCCCucccccuuGUcuucugcgGUUCGGCGg- -3'
miRNA:   3'- -GGGCGGGGG--------CAauuaa---UAAGUCGCgc -5'
31128 5' -51.7 NC_006560.1 + 18882 0.67 0.980214
Target:  5'- cCCCGCCCgCCGUggg-----CGGCGg- -3'
miRNA:   3'- -GGGCGGG-GGCAauuaauaaGUCGCgc -5'
31128 5' -51.7 NC_006560.1 + 147460 0.66 0.986043
Target:  5'- uCCCGCCacccaCCGgcgUGGUUGUcgucgUCGGUGUc -3'
miRNA:   3'- -GGGCGGg----GGCa--AUUAAUA-----AGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 57969 0.66 0.986043
Target:  5'- gCCUuauaGCCCCCGc-------UCGGCGCGg -3'
miRNA:   3'- -GGG----CGGGGGCaauuaauaAGUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.