miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31128 5' -51.7 NC_006560.1 + 66938 0.71 0.880419
Target:  5'- cCCCGCCCCgGggcgggccUUgGGCGCGu -3'
miRNA:   3'- -GGGCGGGGgCaauuaau-AAgUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 86876 0.71 0.883286
Target:  5'- cCCCGCCCCCGccgg-----CGGuCGCGu -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaaGUC-GCGC- -5'
31128 5' -51.7 NC_006560.1 + 56093 0.71 0.885412
Target:  5'- gCCCGCCCCCuccgcc----CAGCGCa -3'
miRNA:   3'- -GGGCGGGGGcaauuaauaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 755 0.71 0.886818
Target:  5'- cCCCGUCCCCcccccccg--CGGCGCGg -3'
miRNA:   3'- -GGGCGGGGGcaauuaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 125511 0.71 0.893705
Target:  5'- cCCCGCCUCCGcgccggccgCGGUGCGc -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 24057 0.71 0.895725
Target:  5'- cCCgCGCCCCCGgcccg----CGGCGCu -3'
miRNA:   3'- -GG-GCGGGGGCaauuaauaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 60274 0.71 0.89706
Target:  5'- gCCGCCCCCGggcc-----CGGCGCc -3'
miRNA:   3'- gGGCGGGGGCaauuaauaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 27796 0.71 0.898385
Target:  5'- gCCCGgCCgCCGUUcc---UUCGGCGCGc -3'
miRNA:   3'- -GGGCgGG-GGCAAuuaauAAGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 6347 0.7 0.902301
Target:  5'- cCCCGCCCCgGcccgcccUUCGGgGCGg -3'
miRNA:   3'- -GGGCGGGGgCaauuaauAAGUCgCGC- -5'
31128 5' -51.7 NC_006560.1 + 57937 0.7 0.902946
Target:  5'- gCCCGCcuuccCCCCGUgcgcgcccgCGGCGCGc -3'
miRNA:   3'- -GGGCG-----GGGGCAauuaauaa-GUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 77016 0.7 0.912922
Target:  5'- aCCUGCCCCCGUgggcggucgacgaGUUCcggGGCGCc -3'
miRNA:   3'- -GGGCGGGGGCAauuaa--------UAAG---UCGCGc -5'
31128 5' -51.7 NC_006560.1 + 23366 0.7 0.914125
Target:  5'- gCCGCCCCCGgccucgccggcuaCGGCGCc -3'
miRNA:   3'- gGGCGGGGGCaauuaauaa----GUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 68646 0.7 0.917673
Target:  5'- uCCCGgCCCCGUUcGUccaggagggccugcgGUUCcuGGCGCGg -3'
miRNA:   3'- -GGGCgGGGGCAAuUAa--------------UAAG--UCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 49847 0.7 0.919414
Target:  5'- uCCCGCCCCgGUcauuccggUC-GCGCGa -3'
miRNA:   3'- -GGGCGGGGgCAauuaaua-AGuCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 103016 0.7 0.925055
Target:  5'- cCCCGCCUCCGcgcccgg-UCGacGCGCGg -3'
miRNA:   3'- -GGGCGGGGGCaauuaauaAGU--CGCGC- -5'
31128 5' -51.7 NC_006560.1 + 27367 0.7 0.92832
Target:  5'- aCCGCCCcgCCGggAAacg--CGGCGCGg -3'
miRNA:   3'- gGGCGGG--GGCaaUUaauaaGUCGCGC- -5'
31128 5' -51.7 NC_006560.1 + 82432 0.7 0.930447
Target:  5'- cCCCGgCCCCGUccgcggcgUCGGUGCc -3'
miRNA:   3'- -GGGCgGGGGCAauuaaua-AGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 58401 0.7 0.933562
Target:  5'- -gCGCCCCCGggGGccgcgUCGGUGCu -3'
miRNA:   3'- ggGCGGGGGCaaUUaaua-AGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 99182 0.7 0.933562
Target:  5'- gCCgCGCCCCCGg-----AggCGGCGCc -3'
miRNA:   3'- -GG-GCGGGGGCaauuaaUaaGUCGCGc -5'
31128 5' -51.7 NC_006560.1 + 51852 0.69 0.936588
Target:  5'- cCCgCGCCCCUGgggcg----CGGCGCGu -3'
miRNA:   3'- -GG-GCGGGGGCaauuaauaaGUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.